View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11557A_low_372 (Length: 230)
Name: NF11557A_low_372
Description: NF11557A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11557A_low_372 |
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Alignment Details
Target: chr8 (Bit Score: 190; Significance: 1e-103; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 7 - 224
Target Start/End: Complemental strand, 45451263 - 45451046
Alignment:
| Q |
7 |
atcatacccaatttgccaatctacaatgttacttgttattctgcttgttgatttgtgttttttgttgtactgttcttgttcctccttcttaggtagtgat |
106 |
Q |
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| T |
45451263 |
atcagacccaatttgccaatctacaatgttacttgttattctgcttgttgatttgtgttttctgttgtactgttcttgttcctccttcttaggtagtgat |
45451164 |
T |
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| Q |
107 |
tcattgtttgcactttagtggcttttgggttgggaggcactcttttatttctttttgccaatgtttttctttgttgttgtaggcttgtagtcactaggct |
206 |
Q |
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| T |
45451163 |
tcattgtttgcaatttagtggcttttgggttgggaggtactcttttatttctttctgccaatgtttttctttgttgttgtaggcttgtagttacttggct |
45451064 |
T |
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| Q |
207 |
tttgcaaatcttcttaat |
224 |
Q |
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|||||||||||||||||| |
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| T |
45451063 |
tttgcaaatcttcttaat |
45451046 |
T |
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Back To:
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Target: chr5 (Bit Score: 166; Significance: 5e-89; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 166; E-Value: 5e-89
Query Start/End: Original strand, 39 - 224
Target Start/End: Original strand, 6453685 - 6453870
Alignment:
| Q |
39 |
ttgttattctgcttgttgatttgtgttttttgttgtactgttcttgttcctccttcttaggtagtgattcattgtttgcactttagtggcttttgggttg |
138 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6453685 |
ttgttattctgcttgttgatttgtgctttttgttgtactgttcttgttcctccttcttaggtagtgattcattgtttgcactttagtggcttttgggttg |
6453784 |
T |
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| Q |
139 |
ggaggcactcttttatttctttttgccaatgtttttctttgttgttgtaggcttgtagtcactaggcttttgcaaatcttcttaat |
224 |
Q |
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| T |
6453785 |
ggaggcactcttttatttctttctgccaatgtttttctttgttgttgtaggcttgtagttacttggcttttgcaaatcttcctaat |
6453870 |
T |
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