View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11557A_low_374 (Length: 230)

Name: NF11557A_low_374
Description: NF11557A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11557A_low_374
NF11557A_low_374
[»] chr6 (13 HSPs)
chr6 (1-223)||(33059449-33059671)
chr6 (10-223)||(33642574-33642787)
chr6 (32-223)||(33359996-33360187)
chr6 (7-223)||(33411845-33412061)
chr6 (15-221)||(33273692-33273898)
chr6 (15-223)||(31567100-31567308)
chr6 (7-223)||(33402506-33402722)
chr6 (26-221)||(33306397-33306592)
chr6 (15-223)||(31560781-31560989)
chr6 (15-223)||(9168674-9168882)
chr6 (7-223)||(33389964-33390180)
chr6 (15-223)||(33264549-33264757)
chr6 (46-219)||(33287473-33287646)
[»] chr2 (1 HSPs)
chr2 (7-223)||(17438800-17439016)
[»] scaffold0428 (1 HSPs)
scaffold0428 (15-223)||(8660-8868)
[»] chr4 (7 HSPs)
chr4 (56-210)||(31496912-31497066)
chr4 (38-209)||(31476960-31477131)
chr4 (98-209)||(31019771-31019882)
chr4 (98-209)||(31489664-31489775)
chr4 (98-209)||(31029652-31029763)
chr4 (46-209)||(31502082-31502245)
chr4 (164-209)||(31150385-31150430)
[»] scaffold1749 (1 HSPs)
scaffold1749 (119-223)||(3-107)


Alignment Details
Target: chr6 (Bit Score: 207; Significance: 1e-113; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 33059449 - 33059671
Alignment:
Q  1 tgcatggtaacgaatgcataattgttggtgctctatgccgagaggttgaaataggatttgtttttgtacatcgagtggatcatcatgtaatccataaatt 100  Q
    ||||||||||||| |||||| ||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33059449 tgcatggtaacgattgcatatttgttggtgttctatgccgagagtttgaaataggatttgtttttgtacatcgagtggatcatcatgtaatccataaatt 33059548  T
Q  101 ttggttacatcgtcaataaaacaagatgcactaaattgatgagatatttggccatataaagtcgtagcaagggttgttttccctattcctcccattccac 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33059549 ttggttacatcgtcaataaaacaagatgcactaaattgatgagatatttggccatataaagtcgtagcaagggttgttttccctattcctcccattccac 33059648  T
Q  201 aaattcctatagcacgaacacca 223  Q
    |||||||||||||||||||||||    
T  33059649 aaattcctatagcacgaacacca 33059671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 10 - 223
Target Start/End: Complemental strand, 33642787 - 33642574
Alignment:
Q  10 acgaatgcataattgttggtgctctatgccgagaggttgaaataggatttgtttttgtacatcgagtggatcatcatgtaatccataaattttggttaca 109  Q
    |||| |||||| ||| ||||| |||||||| |||| ||||||||||||||| |||||| | ||||||||| |||||||||||| |||||||||| |||||    
T  33642787 acgattgcatatttgatggtgttctatgccaagagtttgaaataggatttgcttttgtgcttcgagtggaccatcatgtaatctataaattttgcttaca 33642688  T
Q  110 tcgtcaataaaacaagatgcactaaattgatgagatatttggccatataaagtcgtagcaagggttgttttccctattcctcccattccacaaattccta 209  Q
    || ||||||||||| |||||||||||| |||||||||||||| ||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||    
T  33642687 tcatcaataaaacatgatgcactaaatcgatgagatatttggtcatataaagccgtagcaagggttgtcttccctattcctcccattccacaaattccta 33642588  T
Q  210 tagcacgaacacca 223  Q
    ||||||||||||||    
T  33642587 tagcacgaacacca 33642574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 32 - 223
Target Start/End: Original strand, 33359996 - 33360187
Alignment:
Q  32 tctatgccgagaggttgaaataggatttgtttttgtacatcgagtggatcatcatgtaatccataaattttggttacatcgtcaataaaacaagatgcac 131  Q
    ||||||| ||||| ||||||||||||||  |||||| |||||||||||| |||||||| ||  |||||||| |||||||| ||||||||| |||||||||    
T  33359996 tctatgctgagagtttgaaataggattttcttttgtgcatcgagtggattatcatgtagtctgtaaattttagttacatcatcaataaaaaaagatgcac 33360095  T
Q  132 taaattgatgagatatttggccatataaagtcgtagcaagggttgttttccctattcctcccattccacaaattcctatagcacgaacacca 223  Q
    ||||||| ||||| |||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||    
T  33360096 taaattggtgagagatttggccatataaagtcgtagcaagggttgttttcccaattcctccaattccacaaattcctatagcacgaacacca 33360187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 7 - 223
Target Start/End: Original strand, 33411845 - 33412061
Alignment:
Q  7 gtaacgaatgcataattgttggtgctctatgccgagaggttgaaataggatttgtttttgtacatcgagtggatcatcatgtaatccataaattttggtt 106  Q
    ||||||| |||||| ||| ||||| |||||||||| || ||||| |||||||||  ||||| ||||||| ||| |||||| ||||| |||||||||| ||    
T  33411845 gtaacgattgcatatttgatggtgttctatgccgacagtttgaagtaggatttgcctttgtgcatcgaggggaccatcatataatctataaattttgctt 33411944  T
Q  107 acatcgtcaataaaacaagatgcactaaattgatgagatatttggccatataaagtcgtagcaagggttgttttccctattcctcccattccacaaattc 206  Q
    |||||||| |||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||| || |||||||| ||||||||||||||||    
T  33411945 acatcgtctataaaacaagatgcactaaattgatgagatatctggccatataaagtcatagcaagggttgtctttcctattccgcccattccacaaattc 33412044  T
Q  207 ctatagcacgaacacca 223  Q
    | ||||||| |||||||    
T  33412045 caatagcacaaacacca 33412061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 123; E-Value: 2e-63
Query Start/End: Original strand, 15 - 221
Target Start/End: Original strand, 33273692 - 33273898
Alignment:
Q  15 tgcataattgttggtgctctatgccgagaggttgaaataggatttgtttttgtacatcgagtggatcatcatgtaatccataaattttggttacatcgtc 114  Q
    |||||| ||| ||||| ||||||||||||| ||||| ||||||||| |||||| ||||||| ||| |||||||||||  |||||||||| ||||||| ||    
T  33273692 tgcatatttgatggtgttctatgccgagagtttgaagtaggatttgcttttgtgcatcgaggggaccatcatgtaatttataaattttgcttacatcatc 33273791  T
Q  115 aataaaacaagatgcactaaattgatgagatatttggccatataaagtcgtagcaagggttgttttccctattcctcccattccacaaattcctatagca 214  Q
     |||||||| |||||||||||| |||||||||||||  ||||||||| | ||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  33273792 tataaaacaggatgcactaaatcgatgagatatttgatcatataaagccatagcaagggttgtcttccctattcctcccattccacaaattcctatagca 33273891  T
Q  215 cgaacac 221  Q
    |||||||    
T  33273892 cgaacac 33273898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 15 - 223
Target Start/End: Complemental strand, 31567308 - 31567100
Alignment:
Q  15 tgcataattgttggtgctctatgccgagaggttgaaataggatttgtttttgtacatcgagtggatcatcatgtaatccataaattttggttacatcgtc 114  Q
    |||||| ||||||||| |||||||| | || ||||| ||||||||| |||||| ||||||| ||| |||||| | ||| |||||||||| ||||||| ||    
T  31567308 tgcatatttgttggtgatctatgccaacagtttgaagtaggatttgcttttgtgcatcgaggggaccatcatatgatctataaattttgcttacatcatc 31567209  T
Q  115 aataaaacaagatgcactaaattgatgagatatttggccatataaagtcgtagcaagggttgttttccctattcctcccattccacaaattcctatagca 214  Q
    |||| ||||||||||||||||| ||||||||||||||||||||||||||  |||||||| ||| ||||||||||| ||||||||||||||||||||||||    
T  31567208 aatataacaagatgcactaaatcgatgagatatttggccatataaagtctcagcaagggctgtcttccctattccccccattccacaaattcctatagca 31567109  T
Q  215 cgaacacca 223  Q
    |||||||||    
T  31567108 cgaacacca 31567100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 117; E-Value: 9e-60
Query Start/End: Original strand, 7 - 223
Target Start/End: Original strand, 33402506 - 33402722
Alignment:
Q  7 gtaacgaatgcataattgttggtgctctatgccgagaggttgaaataggatttgtttttgtacatcgagtggatcatcatgtaatccataaattttggtt 106  Q
    ||||||| |||||| ||| ||||| ||||||||||||| ||||  ||||||||| |||||| |||| | |||  |||||| ||||| |||||||||| ||    
T  33402506 gtaacgattgcatatttgatggtgttctatgccgagagtttgatgtaggatttgcttttgtgcatcaattgggccatcatataatctataaattttgctt 33402605  T
Q  107 acatcgtcaataaaacaagatgcactaaattgatgagatatttggccatataaagtcgtagcaagggttgttttccctattcctcccattccacaaattc 206  Q
    ||||| ||||| ||||| |||||||||||| ||||||| ||||||||||||||| || ||||||||||||| ||||||||||||||||||||||||||||    
T  33402606 acatcatcaatgaaacaggatgcactaaatcgatgagagatttggccatataaattcatagcaagggttgtcttccctattcctcccattccacaaattc 33402705  T
Q  207 ctatagcacgaacacca 223  Q
     ||||||||||||||||    
T  33402706 ttatagcacgaacacca 33402722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 26 - 221
Target Start/End: Original strand, 33306397 - 33306592
Alignment:
Q  26 tggtgctctatgccgagaggttgaaataggatttgtttttgtacatcgagtggatcatcatgtaatccataaattttggttacatcgtcaataaaacaag 125  Q
    ||||| |||||||| |||| ||||||||||||||| |||||| ||| ||||||| |||||||||| | |||||||||||||||||| |||||| | || |    
T  33306397 tggtgttctatgcctagagtttgaaataggatttgcttttgtgcattgagtggaccatcatgtaaactataaattttggttacatcatcaatatagcagg 33306496  T
Q  126 atgcactaaattgatgagatatttggccatataaagtcgtagcaagggttgttttccctattcctcccattccacaaattcctatagcacgaacac 221  Q
    ||||||||||| |||||||||||||| ||||||||| | ||||||||||||| ||||||||||||||||||||| ||||||||||||||| |||||    
T  33306497 atgcactaaatcgatgagatatttggtcatataaagccatagcaagggttgtcttccctattcctcccattccagaaattcctatagcacaaacac 33306592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 15 - 223
Target Start/End: Complemental strand, 31560989 - 31560781
Alignment:
Q  15 tgcataattgttggtgctctatgccgagaggttgaaataggatttgtttttgtacatcgagtggatcatcatgtaatccataaattttggttacatcgtc 114  Q
    |||||| ||| | ||| |||||||||| || ||||| ||||||||| |||||| ||||||| ||| |||||  | ||| |||||||||| ||||||| ||    
T  31560989 tgcatatttgattgtgttctatgccgacagtttgaagtaggatttgcttttgtgcatcgaggggaccatcacctgatctataaattttgcttacatcatc 31560890  T
Q  115 aataaaacaagatgcactaaattgatgagatatttggccatataaagtcgtagcaagggttgttttccctattcctcccattccacaaattcctatagca 214  Q
    ||||||||| |||||||||||| ||||||||||||||||||| |||||| ||||||||| ||| ||||||||||||||||||||||||||||||||| ||    
T  31560889 aataaaacaggatgcactaaatcgatgagatatttggccatacaaagtcatagcaagggctgtcttccctattcctcccattccacaaattcctataaca 31560790  T
Q  215 cgaacacca 223  Q
    |||||||||    
T  31560789 cgaacacca 31560781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 15 - 223
Target Start/End: Original strand, 9168674 - 9168882
Alignment:
Q  15 tgcataattgttggtgctctatgccgagaggttgaaataggatttgtttttgtacatcgagtggatcatcatgtaatccataaattttggttacatcgtc 114  Q
    |||||| ||| ||||| ||||||||||||| ||||| || |||||| |||||| ||||||||||  ||||||| |||| |||||||||  ||| ||| ||    
T  9168674 tgcatatttgatggtgttctatgccgagagtttgaagtaagatttgcttttgtgcatcgagtgggccatcatgcaatctataaattttacttatatcatc 9168773  T
Q  115 aataaaacaagatgcactaaattgatgagatatttggccatataaagtcgtagcaagggttgttttccctattcctcccattccacaaattcctatagca 214  Q
    ||||||||| |||||||||||| |||||||||||||| ||||||||  | | ||||| ||||| ||||||||||||||||||||||||||||||||||||    
T  9168774 aataaaacaggatgcactaaatcgatgagatatttggtcatataaaaccattgcaagagttgtcttccctattcctcccattccacaaattcctatagca 9168873  T
Q  215 cgaacacca 223  Q
    |||||||||    
T  9168874 cgaacacca 9168882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 7 - 223
Target Start/End: Original strand, 33389964 - 33390180
Alignment:
Q  7 gtaacgaatgcataattgttggtgctctatgccgagaggttgaaataggatttgtttttgtacatcgagtggatcatcatgtaatccataaattttggtt 106  Q
    ||||||| |||||| ||| ||||| | |||| |||||| ||||||||| ||||| |||||| |||| |  ||| |||||  ||||| ||| |||||| ||    
T  33389964 gtaacgattgcatatttgatggtgttttatgtcgagagtttgaaatagaatttgcttttgtgcatccaaaggaccatcacataatctatatattttgctt 33390063  T
Q  107 acatcgtcaataaaacaagatgcactaaattgatgagatatttggccatataaagtcgtagcaagggttgttttccctattcctcccattccacaaattc 206  Q
    ||||| ||||||||||||  |||||||||| |||||||||||||| ||||||||||| | ||||||||||| ||||||||||||||||||||||||||||    
T  33390064 acatcatcaataaaacaatttgcactaaatcgatgagatatttggtcatataaagtcatggcaagggttgtcttccctattcctcccattccacaaattc 33390163  T
Q  207 ctatagcacgaacacca 223  Q
    |||||||| ||||||||    
T  33390164 ctatagcatgaacacca 33390180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 15 - 223
Target Start/End: Original strand, 33264549 - 33264757
Alignment:
Q  15 tgcataattgttggtgctctatgccgagaggttgaaataggatttgtttttgtacatcgagtggatcatcatgtaatccataaattttggttacatcgtc 114  Q
    |||||| ||| ||||| |||||||| |||| ||||  ||||||||| |||||| |||| | |||| |||||||||||| | |||||||| ||||||| ||    
T  33264549 tgcatatttgatggtgttctatgccaagagtttgatgtaggatttgcttttgtgcatctattggaccatcatgtaatctaaaaattttgcttacatcatc 33264648  T
Q  115 aataaaacaagatgcactaaattgatgagatatttggccatataaagtcgtagcaagggttgttttccctattcctcccattccacaaattcctatagca 214  Q
    ||| ||||| ||||||  |||| ||||| | ||||||||||||||| || ||||||||||||| ||||||||||||||||| || |||||||||||||||    
T  33264649 aatgaaacaggatgcatcaaatcgatgacagatttggccatataaattcatagcaagggttgtcttccctattcctcccatcccccaaattcctatagca 33264748  T
Q  215 cgaacacca 223  Q
    |||||||||    
T  33264749 cgaacacca 33264757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 46 - 219
Target Start/End: Original strand, 33287473 - 33287646
Alignment:
Q  46 ttgaaataggatttgtttttgtacatcgagtggatcatcatgtaatccataaattttggttacatcgtcaataaaacaagatgcactaaattgatgagat 145  Q
    ||||| ||||||||  |||||| ||||||| ||| |||||||||||| | |  ||||||  ||||| ||||||||||||||| |||||||| |||| |||    
T  33287473 ttgaagtaggatttccttttgtgcatcgaggggaccatcatgtaatctaaattttttggcaacatcttcaataaaacaagatccactaaatcgatgggat 33287572  T
Q  146 atttggccatataaagtcgtagcaagggttgttttccctattcctcccattccacaaattcctatagcacgaac 219  Q
    |||||  ||||||||| | ||| |||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  33287573 atttgatcatataaagccatagaaagggttgttttccctattcctcccattccacaaattcctattgcacgaac 33287646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 109; Significance: 6e-55; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 7 - 223
Target Start/End: Complemental strand, 17439016 - 17438800
Alignment:
Q  7 gtaacgaatgcataattgttggtgctctatgccgagaggttgaaataggatttgtttttgtacatcgagtggatcatcatgtaatccataaattttggtt 106  Q
    ||||||| |||||| ||| ||||| |||||||| |||| |||||||| |||||| |||||| | || |||||| |||||||||||| |||||||||| ||    
T  17439016 gtaacgattgcatatttgatggtgttctatgccaagagtttgaaatatgatttgcttttgtgcttcaagtggaccatcatgtaatctataaattttgctt 17438917  T
Q  107 acatcgtcaataaaacaagatgcactaaattgatgagatatttggccatataaagtcgtagcaagggttgttttccctattcctcccattccacaaattc 206  Q
    ||||| ||||| ||||||||||||  |||| ||||||| |||||||||||||||  |  |||||||||||| ||||||||||||||||| || |||||||    
T  17438916 acatcatcaatgaaacaagatgcatcaaatcgatgagagatttggccatataaatccaaagcaagggttgtcttccctattcctcccatcccccaaattc 17438817  T
Q  207 ctatagcacgaacacca 223  Q
    |||||||||||||||||    
T  17438816 ctatagcacgaacacca 17438800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0428 (Bit Score: 93; Significance: 2e-45; HSPs: 1)
Name: scaffold0428
Description:

Target: scaffold0428; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 15 - 223
Target Start/End: Original strand, 8660 - 8868
Alignment:
Q  15 tgcataattgttggtgctctatgccgagaggttgaaataggatttgtttttgtacatcgagtggatcatcatgtaatccataaattttggttacatcgtc 114  Q
    |||||| ||| ||||| |||||||| |||| ||||  ||||||||| |||||| |||| | |||| |||||||||||| | |||||||| ||||||| ||    
T  8660 tgcatatttgatggtgttctatgccaagagtttgatgtaggatttgcttttgtgcatcaattggaccatcatgtaatctaaaaattttgcttacatcatc 8759  T
Q  115 aataaaacaagatgcactaaattgatgagatatttggccatataaagtcgtagcaagggttgttttccctattcctcccattccacaaattcctatagca 214  Q
    ||| ||||| ||||||  |||| ||||| | ||||||||||||||| || ||||||||||||| ||||||||||||||||| || |||||||||||| ||    
T  8760 aatgaaacaggatgcatcaaatcgatgacagatttggccatataaattcatagcaagggttgtcttccctattcctcccatcccccaaattcctataaca 8859  T
Q  215 cgaacacca 223  Q
    |||||||||    
T  8860 cgaacacca 8868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 59; Significance: 4e-25; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 56 - 210
Target Start/End: Complemental strand, 31497066 - 31496912
Alignment:
Q  56 atttgtttttgtacatcgagtggatcatcatgtaatccataaattttggttacatcgtcaataaaacaagatgcactaaattgatgagatatttggccat 155  Q
    ||||| ||||| |||| ||||||  |||||||||||| | |||||||| ||||||| |||||||||||  |||||  |||||||| ||| ||||   |||    
T  31497066 atttgcttttgaacattgagtggtccatcatgtaatctaaaaattttgcttacatcatcaataaaacatcatgcatcaaattgattagagattttagcat 31496967  T
Q  156 ataaagtcgtagcaagggttgttttccctattcctcccattccacaaattcctat 210  Q
    | ||||  ||||||||||| || ||||||||||||||||| ||||||||||||||    
T  31496966 acaaagcagtagcaagggtagtcttccctattcctcccatcccacaaattcctat 31496912  T

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Target: chr4; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 38 - 209
Target Start/End: Complemental strand, 31477131 - 31476960
Alignment:
Q  38 ccgagaggttgaaataggatttgtttttgtacatcgagtggatcatcatgtaatccataaattttggttacatcgtcaataaaacaagatgcactaaatt 137  Q
    ||||||| ||||  ||| ||||| ||||| |||||||||||  |||||||||||| | | |||||| ||||||| |||||||||||  |||||| |||||    
T  31477131 ccgagagtttgatgtagaatttgcttttgaacatcgagtggcccatcatgtaatctaaacattttgcttacatcatcaataaaacagcatgcaccaaatt 31477032  T
Q  138 gatgagatatttggccatataaagtcgtagcaagggttgttttccctattcctcccattccacaaattccta 209  Q
    ||||||| |||    |||||| |  | |  |||||||||| ||||||||||| ||||| |||||||||||||    
T  31477031 gatgagaaattctatcatatagaaccatgccaagggttgtcttccctattccacccatcccacaaattccta 31476960  T

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Target: chr4; HSP #3
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 98 - 209
Target Start/End: Original strand, 31019771 - 31019882
Alignment:
Q  98 attttggttacatcgtcaataaaacaagatgcactaaattgatgagatatttggccatataaagtcgtagcaagggttgttttccctattcctcccattc 197  Q
    |||||| ||| ||| ||||||||||||  ||||  |||||||||||| ||||| ||||||||||  ||||| || ||||| ||||||||||| ||||| |    
T  31019771 attttgcttagatcatcaataaaacaacgtgcatcaaattgatgagagatttgaccatataaagcagtagccagagttgtcttccctattccacccatcc 31019870  T
Q  198 cacaaattccta 209  Q
    ||||||||||||    
T  31019871 cacaaattccta 31019882  T

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Target: chr4; HSP #4
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 98 - 209
Target Start/End: Complemental strand, 31489775 - 31489664
Alignment:
Q  98 attttggttacatcgtcaataaaacaagatgcactaaattgatgagatatttggccatataaagtcgtagcaagggttgttttccctattcctcccattc 197  Q
    |||||| ||| ||| ||||||||||||  ||||  |||||||||||| ||||| ||||||||||  ||||| || ||||| ||||||||||| ||||| |    
T  31489775 attttgcttagatcatcaataaaacaacgtgcatcaaattgatgagagatttgaccatataaagcagtagccagagttgtcttccctattccacccatcc 31489676  T
Q  198 cacaaattccta 209  Q
    ||||||||||||    
T  31489675 cacaaattccta 31489664  T

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Target: chr4; HSP #5
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 98 - 209
Target Start/End: Original strand, 31029652 - 31029763
Alignment:
Q  98 attttggttacatcgtcaataaaacaagatgcactaaattgatgagatatttggccatataaagtcgtagcaagggttgttttccctattcctcccattc 197  Q
    |||||| ||| ||| ||||||||||||  ||||  |||||||||||| ||||| ||||||||||  ||||  || ||||| ||||||||||| ||||| |    
T  31029652 attttgcttagatcatcaataaaacaacgtgcatcaaattgatgagagatttgaccatataaagcagtagtcagagttgtcttccctattccacccatcc 31029751  T
Q  198 cacaaattccta 209  Q
    ||||||||||||    
T  31029752 cacaaattccta 31029763  T

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Target: chr4; HSP #6
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 46 - 209
Target Start/End: Complemental strand, 31502245 - 31502082
Alignment:
Q  46 ttgaaataggatttgtttttgtacatcgagtggatcatcatgtaatccataaattttggttacatcgtcaataaaacaagatgcactaaattgatgagat 145  Q
    |||| |||| ||||| ||||| ||| | |||||  |||||||||||| | | |||||| ||||||| || ||||||||| |||||| ||||||||||||     
T  31502245 ttgatatagtatttgcttttgaacaccaagtggtccatcatgtaatctaaacattttgcttacatcatcgataaaacaacatgcaccaaattgatgagaa 31502146  T
Q  146 atttggccatataaagtcgtagcaagggttgttttccctattcctcccattccacaaattccta 209  Q
    |||    |||||| |  | || |||||||||| ||||||||||| ||||| ||||| |||||||    
T  31502145 attctatcatatagaaccctaccaagggttgtcttccctattccacccatcccacagattccta 31502082  T

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Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 164 - 209
Target Start/End: Original strand, 31150385 - 31150430
Alignment:
Q  164 gtagcaagggttgttttccctattcctcccattccacaaattccta 209  Q
    |||||||||||||| ||||||| ||| ||||| |||||||||||||    
T  31150385 gtagcaagggttgtcttccctactccacccatcccacaaattccta 31150430  T

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Target: scaffold1749 (Bit Score: 57; Significance: 6e-24; HSPs: 1)
Name: scaffold1749
Description:

Target: scaffold1749; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 119 - 223
Target Start/End: Original strand, 3 - 107
Alignment:
Q  119 aaacaagatgcactaaattgatgagatatttggccatataaagtcgtagcaagggttgttttccctattcctcccattccacaaattcctatagcacgaa 218  Q
    ||||| ||||||  |||| ||||| | ||||||||||||||| || ||||||||||||| ||||||||||||||||| || |||||||||||| ||||||    
T  3 aaacaggatgcatcaaatcgatgacagatttggccatataaattcatagcaagggttgtcttccctattcctcccatcccccaaattcctataacacgaa 102  T
Q  219 cacca 223  Q
    |||||    
T  103 cacca 107  T

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