View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11557A_low_377 (Length: 230)

Name: NF11557A_low_377
Description: NF11557A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11557A_low_377
NF11557A_low_377
[»] chr2 (10 HSPs)
chr2 (1-224)||(9329221-9329444)
chr2 (1-215)||(9283487-9283698)
chr2 (8-224)||(9275150-9275368)
chr2 (95-131)||(9316738-9316774)
chr2 (67-119)||(9321670-9321722)
chr2 (1-51)||(7115110-7115160)
chr2 (186-224)||(9060402-9060440)
chr2 (186-224)||(9316832-9316870)
chr2 (1-76)||(9357802-9357880)
chr2 (85-161)||(10348509-10348585)
[»] chr3 (1 HSPs)
chr3 (1-72)||(37463120-37463191)
[»] chr4 (1 HSPs)
chr4 (172-224)||(561966-562015)


Alignment Details
Target: chr2 (Bit Score: 204; Significance: 1e-111; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 9329221 - 9329444
Alignment:
Q  1 aaagcgatttggccataggagatagcaatgaggccgttgcatgaaccgataggggcaatgttgctgttacgcgtgacaggagcaatgttggtgctgaaag 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| |  | |||||||||||||||||||||||||||||||||||||||||||    
T  9329221 aaagcgatttggccataggagatagcaatgaggccgttgcatgaaccgataagacccatgttgctgttacgcgtgacaggagcaatgttggtgctgaaag 9329320  T
Q  101 gatggttgagtggaatcatggatttggttagattaggaagatcgagttggtggagatcggtattgagctgaaggatgaggttgaaattgagggaattatt 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  9329321 gatggttgagtggaatcatggatttggttagattaggaagatcgagttggtagagatcggtattgagctgaaggatgaggttgaaattgagggaattatt 9329420  T
Q  201 tttgaggtgaaggttagtgaagtt 224  Q
    ||||||||||||||||||||||||    
T  9329421 tttgaggtgaaggttagtgaagtt 9329444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 1 - 215
Target Start/End: Complemental strand, 9283698 - 9283487
Alignment:
Q  1 aaagcgatttggccataggagatagcaatgaggccgttgcatgaaccgataggggcaatgttgctgttacgcgtgacaggagcaatgttggtgctgaaag 100  Q
    ||||| ||| |||||| | |||| || | ||||||||| |||||||| ||| | ||  || |||||||| |||||| |||| | ||||||||| ||||||    
T  9283698 aaagcaattgggccattgtagatggcgaggaggccgttacatgaaccaataagagccttgatgctgttaagcgtgaaaggatcgatgttggtggtgaaag 9283599  T
Q  101 gatggttgagtggaatcatggatttggttagattaggaagatcgagttggtggagatcggtattgagctgaaggatgaggttgaaattgagggaattatt 200  Q
    |||||||||| || || |||||||||||||| ||||| | ||||||||||| ||||| ||| ||| |  | |||||||| ||||| ||||||||   | |    
T  9283598 gatggttgagcggtattatggatttggttaggttagggaaatcgagttggtagagattggtcttgtgacggaggatgagtttgaagttgaggga---act 9283502  T
Q  201 tttgaggtgaaggtt 215  Q
    |||||||||||||||    
T  9283501 tttgaggtgaaggtt 9283487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 8 - 224
Target Start/End: Original strand, 9275150 - 9275368
Alignment:
Q  8 tttggccataggagatagcaatgaggccgttgcatgaaccgataggggcaatgttgctgttacgcgtgacaggagcaatg----ttggtgctgaaaggat 103  Q
    ||||||||| ||||||||||||||||||||| |||||||| ||| | || ||| ||||||||||||||| || | || ||    ||| | ||||||||||    
T  9275150 tttggccattggagatagcaatgaggccgttacatgaacctataagagccatggtgctgttacgcgtgaaagaatcattgttgcttgctactgaaaggat 9275249  T
Q  104 ggttgagtggaatcatggatttggttagattaggaagatcgagttggtggag-atcggtattgagctgaaggatgaggttgaaattgagggaattatttt 202  Q
    |||||||| | || ||| |||||||||| ||||| | || ||||| || |||  | ||| ||| | ||||| ||||||||||||||||||||   |||||    
T  9275250 ggttgagttgtattatgaatttggttaggttagggaaattgagttcgtagagtttgggtgttgtgttgaagaatgaggttgaaattgaggga---atttt 9275346  T
Q  203 tgaggtgaaggttagtgaagtt 224  Q
    |||| ||||||||  |||||||    
T  9275347 tgagatgaaggttgatgaagtt 9275368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 95 - 131
Target Start/End: Original strand, 9316738 - 9316774
Alignment:
Q  95 tgaaaggatggttgagtggaatcatggatttggttag 131  Q
    ||||||||||||||||||||||||||||||| |||||    
T  9316738 tgaaaggatggttgagtggaatcatggatttcgttag 9316774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 67 - 119
Target Start/End: Original strand, 9321670 - 9321722
Alignment:
Q  67 ttacgcgtgacaggagcaatgttggtgctgaaaggatggttgagtggaatcat 119  Q
    ||||| ||||||||||  || |||||| |||||||||||||||||||||||||    
T  9321670 ttacgtgtgacaggagtgattttggtggtgaaaggatggttgagtggaatcat 9321722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 7115160 - 7115110
Alignment:
Q  1 aaagcgatttggccataggagatagcaatgaggccgttgcatgaaccgata 51  Q
    |||||||||||||||| |||||| || | ||||||||| ||||||||||||    
T  7115160 aaagcgatttggccattggagatggcgaggaggccgttacatgaaccgata 7115110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 186 - 224
Target Start/End: Complemental strand, 9060440 - 9060402
Alignment:
Q  186 attgagggaattatttttgaggtgaaggttagtgaagtt 224  Q
    |||||||| |||||||||||||| |||||||||||||||    
T  9060440 attgaggggattatttttgaggtaaaggttagtgaagtt 9060402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 186 - 224
Target Start/End: Original strand, 9316832 - 9316870
Alignment:
Q  186 attgagggaattatttttgaggtgaaggttagtgaagtt 224  Q
    ||||||||||||||||||||||||||||||  |||||||    
T  9316832 attgagggaattatttttgaggtgaaggttgatgaagtt 9316870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 76
Target Start/End: Original strand, 9357802 - 9357880
Alignment:
Q  1 aaagcgatttggccataggagatagcaatgaggccgttgcatgaaccgataggggcaatgt---tgctgttacgcgtga 76  Q
    |||||||||| ||||| |||||| || | ||||||||| |||||||||||| | | |||||   |||||||||||||||    
T  9357802 aaagcgatttcgccattggagatggcgaggaggccgttacatgaaccgataagagaaatgttggtgctgttacgcgtga 9357880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 85 - 161
Target Start/End: Original strand, 10348509 - 10348585
Alignment:
Q  85 atgttggtgctgaaaggatggttgagtggaatcatggatttggttagattaggaagatcgagttggtggagatcggt 161  Q
    ||||||||  |||| |||| |||||||||||| || ||||||||||| ||||| | || |||||||| || ||||||    
T  10348509 atgttggtagtgaagggatagttgagtggaatgatagatttggttaggttagggaaatggagttggtagaaatcggt 10348585  T

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Target: chr3 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 72
Target Start/End: Original strand, 37463120 - 37463191
Alignment:
Q  1 aaagcgatttggccataggagatagcaatgaggccgttgcatgaaccgataggggcaatgttgctgttacgc 72  Q
    |||||||||||||||| ||||||||| | ||||||||| |||||||||||| | || ||| |||||| ||||    
T  37463120 aaagcgatttggccattggagatagcgaggaggccgttacatgaaccgataagagccatggtgctgtcacgc 37463191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 172 - 224
Target Start/End: Original strand, 561966 - 562015
Alignment:
Q  172 aggatgaggttgaaattgagggaattatttttgaggtgaaggttagtgaagtt 224  Q
    ||||||||||| ||||||||||| ||   ||||||||||||||||||||||||    
T  561966 aggatgaggttaaaattgagggagtt---tttgaggtgaaggttagtgaagtt 562015  T

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