View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11557A_low_379 (Length: 230)
Name: NF11557A_low_379
Description: NF11557A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11557A_low_379 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 220; Significance: 1e-121; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 52033780 - 52033557
Alignment:
| Q |
1 |
agaaaagaagatactcatattaatgtgaccttgattattatatgcatccatatctatctcaaacttgttgttcacaatagctgtcacattgtatctcaca |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52033780 |
agaaaagaagatactcatattaatgtgaccttgattattatatgcatccatatctatctcaaacttgttgttcacaatagctgtcacattgtatctcaca |
52033681 |
T |
|
| Q |
101 |
ccttgagcagtgaatagttcattagagtatatggggaagtttttggcattatagagattaaatccccaataagccgttggaataagaatgtagattaata |
200 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52033680 |
ccttgagcactgaatagttcattagagtatatggggaagtttttggcattatagagattaaatccccaataagccgttggaataagaatgtagattaata |
52033581 |
T |
|
| Q |
201 |
aaatgtagccaacaaggatgttaa |
224 |
Q |
| |
|
|||||||||||||||||||||||| |
|
|
| T |
52033580 |
aaatgtagccaacaaggatgttaa |
52033557 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University