View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11557A_low_385 (Length: 229)
Name: NF11557A_low_385
Description: NF11557A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11557A_low_385 |
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Alignment Details
Target: chr2 (Bit Score: 159; Significance: 8e-85; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 159; E-Value: 8e-85
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 45513046 - 45513269
Alignment:
| Q |
1 |
ggggtgattgtctatttgattaaaatttacgggaggttaatgttagtttcgaaactaga-gggatatcgatgtcgttttaataaactttataagggaggt |
99 |
Q |
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| T |
45513046 |
ggggtgattgtctatttgattaaaacttacgggaggttaatgttagtttcgaaactagagggggtgtcgatgtcgttttaataaactttataagagaggt |
45513145 |
T |
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| Q |
100 |
gaatataattttaccct-aaaaaactgtatctcacggctatagattctttaactcctccaaatcgtacgaaatgttcagnnnnnnngacaactattaaac |
198 |
Q |
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| T |
45513146 |
gaatataattttaccctaaaaaaactgtatctcacggctatagattctttaactcttccaaatcgtactaaatgttcag-ttttttgacaactattaaac |
45513244 |
T |
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| Q |
199 |
taactaaagcatataagtaaattat |
223 |
Q |
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| T |
45513245 |
taactaaagcatataagtaaattat |
45513269 |
T |
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Target: chr3 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 2 - 84
Target Start/End: Original strand, 35744508 - 35744591
Alignment:
| Q |
2 |
gggtgattgtctatttgattaaaatttacgggaggttaatgttagtttcgaaactaga-gggatatcgatgtcgttttaataaa |
84 |
Q |
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||||| |||| ||||||||||||||| | ||||||||||||||||||| |||| |||| ||||| || ||||||||||||||| |
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| T |
35744508 |
gggtgtttgtttatttgattaaaattcaagggaggttaatgttagttttgaaattagaggggatgtcattgtcgttttaataaa |
35744591 |
T |
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