View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11557A_low_387 (Length: 229)

Name: NF11557A_low_387
Description: NF11557A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11557A_low_387
NF11557A_low_387
[»] chr7 (3 HSPs)
chr7 (128-223)||(49125189-49125284)
chr7 (1-115)||(36438818-36438932)
chr7 (58-115)||(40076762-40076819)
[»] chr6 (4 HSPs)
chr6 (1-114)||(6017562-6017675)
chr6 (1-114)||(5696888-5697001)
chr6 (1-115)||(8643941-8644055)
chr6 (1-96)||(25036736-25036831)
[»] chr3 (2 HSPs)
chr3 (1-114)||(20848007-20848120)
chr3 (1-115)||(1118291-1118405)
[»] chr2 (2 HSPs)
chr2 (1-114)||(26678308-26678421)
chr2 (1-115)||(10290602-10290716)
[»] chr1 (1 HSPs)
chr1 (1-114)||(5278693-5278806)
[»] chr5 (1 HSPs)
chr5 (1-115)||(31759200-31759314)
[»] chr4 (1 HSPs)
chr4 (47-115)||(4373048-4373116)


Alignment Details
Target: chr7 (Bit Score: 92; Significance: 8e-45; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 128 - 223
Target Start/End: Original strand, 49125189 - 49125284
Alignment:
Q  128 gctaataagtactaaaatggcgtcaagctttattattaattaatttgctttaagaaaaagtaaaagaggtaacaaacagtgaaatttggacaaaac 223  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  49125189 gctaataagtactaaaatggcgtcaagctttattattaattaatttactttaagaaaaagtaaaagaggtaacaaacagtgaaatttggacaaaac 49125284  T

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Target: chr7; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 1 - 115
Target Start/End: Complemental strand, 36438932 - 36438818
Alignment:
Q  1 ttgatttttgtttgctctatctgaactttttggtaacttttgggcggtcttcaacggtacaccttatgccttgaagattggctgtcgtttatattatatt 100  Q
    |||||||||| ||| ||| | ||||||| || |||||||||||||||||||||| |||||||||| || | ||||||||| |||||||||||||||||||    
T  36438932 ttgatttttgattgttctctttgaacttgtttgtaacttttgggcggtcttcaatggtacaccttgtgtcgtgaagattgactgtcgtttatattatatt 36438833  T
Q  101 tcattttgatttctt 115  Q
    |||||||||||||||    
T  36438832 tcattttgatttctt 36438818  T

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Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 58 - 115
Target Start/End: Complemental strand, 40076819 - 40076762
Alignment:
Q  58 tacaccttatgccttgaagattggctgtcgtttatattatatttcattttgatttctt 115  Q
    ||||| || |||| |||||||||  |||||||||||||||||||||||||||||||||    
T  40076819 tacacattgtgccgtgaagattgattgtcgtttatattatatttcattttgatttctt 40076762  T

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Target: chr6 (Bit Score: 86; Significance: 3e-41; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 1 - 114
Target Start/End: Complemental strand, 6017675 - 6017562
Alignment:
Q  1 ttgatttttgtttgctctatctgaactttttggtaacttttgggcggtcttcaacggtacaccttatgccttgaagattggctgtcgtttatattatatt 100  Q
    |||||||||||||| ||||||||||||| || |||||||||||||||||||||| |||||||||| |||| ||||||||| |||||||||||||||||||    
T  6017675 ttgatttttgtttgttctatctgaacttgtttgtaacttttgggcggtcttcaatggtacaccttgtgccgtgaagattgcctgtcgtttatattatatt 6017576  T
Q  101 tcattttgatttct 114  Q
    ||||||||||||||    
T  6017575 tcattttgatttct 6017562  T

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Target: chr6; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 1 - 114
Target Start/End: Original strand, 5696888 - 5697001
Alignment:
Q  1 ttgatttttgtttgctctatctgaactttttggtaacttttgggcggtcttcaacggtacaccttatgccttgaagattggctgtcgtttatattatatt 100  Q
    ||||||||||||||  |||||||||||| || ||||||||||||| ||||| || |||||||||| |||| |||||||||||||||||||||||||||||    
T  5696888 ttgatttttgtttgtcctatctgaacttgtttgtaacttttgggcagtcttgaatggtacaccttgtgccgtgaagattggctgtcgtttatattatatt 5696987  T
Q  101 tcattttgatttct 114  Q
    ||||||||||||||    
T  5696988 tcattttgatttct 5697001  T

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Target: chr6; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 115
Target Start/End: Original strand, 8643941 - 8644055
Alignment:
Q  1 ttgatttttgtttgctctatctgaactttttggtaacttttgggcggtcttcaacggtacaccttatgccttgaagattggctgtcgtttatattatatt 100  Q
    |||||||||| ||||||| | |||||   || ||||||||||| |||||||||| |||||||||| |||  |||||||||||||||||||||| ||||||    
T  8643941 ttgatttttgattgctctgtttgaacagatttgtaacttttggacggtcttcaatggtacaccttgtgctgtgaagattggctgtcgtttataatatatt 8644040  T
Q  101 tcattttgatttctt 115  Q
    |||||||||||||||    
T  8644041 tcattttgatttctt 8644055  T

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Target: chr6; HSP #4
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 96
Target Start/End: Original strand, 25036736 - 25036831
Alignment:
Q  1 ttgatttttgtttgctctatctgaactttttggtaacttttgggcggtcttcaacggtacaccttatgccttgaagattggctgtcgtttatatta 96  Q
    |||||||||||||||||||||||||||| ||  |||||||||| |||||||||| | |||||||| |||| ||||||||| |||||||||||||||    
T  25036736 ttgatttttgtttgctctatctgaacttgtttataacttttggacggtcttcaatgatacaccttgtgccgtgaagattgactgtcgtttatatta 25036831  T

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Target: chr3 (Bit Score: 86; Significance: 3e-41; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 1 - 114
Target Start/End: Complemental strand, 20848120 - 20848007
Alignment:
Q  1 ttgatttttgtttgctctatctgaactttttggtaacttttgggcggtcttcaacggtacaccttatgccttgaagattggctgtcgtttatattatatt 100  Q
    |||||||||||||| ||||||||||||| || |||||||||||||||||||||| |||||||||| |||| |||||||||| ||||||||||||||||||    
T  20848120 ttgatttttgtttgttctatctgaacttgtttgtaacttttgggcggtcttcaatggtacaccttgtgccgtgaagattggttgtcgtttatattatatt 20848021  T
Q  101 tcattttgatttct 114  Q
    ||||||||||||||    
T  20848020 tcattttgatttct 20848007  T

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Target: chr3; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 1 - 115
Target Start/End: Complemental strand, 1118405 - 1118291
Alignment:
Q  1 ttgatttttgtttgctctatctgaactttttggtaacttttgggcggtcttcaacggtacaccttatgccttgaagattggctgtcgtttatattatatt 100  Q
    |||||||||| ||||||| | ||||||| || |||||||||||||||||||||| |||||||||| |||| |||||||||||||||||||||||||||||    
T  1118405 ttgatttttgattgctctgtttgaacttgtttgtaacttttgggcggtcttcaatggtacaccttgtgccgtgaagattggctgtcgtttatattatatt 1118306  T
Q  101 tcattttgatttctt 115  Q
    |||||||||||||||    
T  1118305 tcattttgatttctt 1118291  T

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Target: chr2 (Bit Score: 86; Significance: 3e-41; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 1 - 114
Target Start/End: Complemental strand, 26678421 - 26678308
Alignment:
Q  1 ttgatttttgtttgctctatctgaactttttggtaacttttgggcggtcttcaacggtacaccttatgccttgaagattggctgtcgtttatattatatt 100  Q
    |||||||||||||| ||||||||||||| || |||||||||||||||||||||| |||||||||| |||| ||||||||||||||||||| |||||||||    
T  26678421 ttgatttttgtttgttctatctgaacttgtttgtaacttttgggcggtcttcaatggtacaccttgtgccgtgaagattggctgtcgtttttattatatt 26678322  T
Q  101 tcattttgatttct 114  Q
    ||||||||||||||    
T  26678321 tcattttgatttct 26678308  T

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Target: chr2; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 1 - 115
Target Start/End: Original strand, 10290602 - 10290716
Alignment:
Q  1 ttgatttttgtttgctctatctgaactttttggtaacttttgggcggtcttcaacggtacaccttatgccttgaagattggctgtcgtttatattatatt 100  Q
    |||||||||| ||||||| | ||||||| || |||| ||||| ||||||||||| |||||||||| |||| |||||||||| ||||||||||||||||||    
T  10290602 ttgatttttgattgctctgtttgaacttgtttgtaatttttgagcggtcttcaatggtacaccttgtgccgtgaagattggttgtcgtttatattatatt 10290701  T
Q  101 tcattttgatttctt 115  Q
    |||||||||||||||    
T  10290702 tcattttgatttctt 10290716  T

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Target: chr1 (Bit Score: 86; Significance: 3e-41; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 1 - 114
Target Start/End: Original strand, 5278693 - 5278806
Alignment:
Q  1 ttgatttttgtttgctctatctgaactttttggtaacttttgggcggtcttcaacggtacaccttatgccttgaagattggctgtcgtttatattatatt 100  Q
    |||||||||||||| ||||||||||||| || |||||||||||||||||||||  |||||||||| |||| |||||||||||||||||||||||||||||    
T  5278693 ttgatttttgtttgttctatctgaacttgtttgtaacttttgggcggtcttcagtggtacaccttgtgccgtgaagattggctgtcgtttatattatatt 5278792  T
Q  101 tcattttgatttct 114  Q
    ||||||||||||||    
T  5278793 tcattttgatttct 5278806  T

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Target: chr5 (Bit Score: 79; Significance: 4e-37; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 1 - 115
Target Start/End: Complemental strand, 31759314 - 31759200
Alignment:
Q  1 ttgatttttgtttgctctatctgaactttttggtaacttttgggcggtcttcaacggtacaccttatgccttgaagattggctgtcgtttatattatatt 100  Q
    |||||||||| ||||| | | ||||||| || |||||||||||||||||||||| ||||||||||||||| |||||||||| ||||||||||||||||||    
T  31759314 ttgatttttgattgctttgtttgaacttgtttgtaacttttgggcggtcttcaatggtacaccttatgccgtgaagattggttgtcgtttatattatatt 31759215  T
Q  101 tcattttgatttctt 115  Q
    |||||||||||||||    
T  31759214 tcattttgatttctt 31759200  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 47 - 115
Target Start/End: Original strand, 4373048 - 4373116
Alignment:
Q  47 gtcttcaacggtacaccttatgccttgaagattggctgtcgtttatattatatttcattttgatttctt 115  Q
    ||||||| ||| ||||||| |||| | ||||| || |||||||  || |||||||||||||||||||||    
T  4373048 gtcttcagcggcacaccttgtgccgtaaagataggttgtcgttcgtaatatatttcattttgatttctt 4373116  T

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