View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11557A_low_394 (Length: 228)
Name: NF11557A_low_394
Description: NF11557A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11557A_low_394 |
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Alignment Details
Target: chr8 (Bit Score: 138; Significance: 3e-72; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 73 - 210
Target Start/End: Complemental strand, 10274788 - 10274651
Alignment:
| Q |
73 |
aagaaattgtaaatgaacggttaagtttggatgacacattttgcttatgtaagccaaagtttatttccacttcattagtctttggctttttatgaacttt |
172 |
Q |
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| T |
10274788 |
aagaaattgtaaatgaacggttaagtttggatgacacattttgcttatgtaagccaaagtttatttccacttcattagtctttggctttttatgaacttt |
10274689 |
T |
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| Q |
173 |
tctttatctaacttcattttatcattaccctatttcat |
210 |
Q |
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| T |
10274688 |
tctttatctaacttcattttatcattaccctatttcat |
10274651 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 141 - 210
Target Start/End: Complemental strand, 10266805 - 10266736
Alignment:
| Q |
141 |
acttcattagtctttggctttttatgaacttttctttatctaacttcattttatcattaccctatttcat |
210 |
Q |
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| T |
10266805 |
acttcattagtctttggctttttctgaacatttctttatctaactttattttatcgttaccccatttcat |
10266736 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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