View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11557A_low_40 (Length: 403)
Name: NF11557A_low_40
Description: NF11557A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11557A_low_40 |
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Alignment Details
Target: chr2 (Bit Score: 178; Significance: 7e-96; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 178; E-Value: 7e-96
Query Start/End: Original strand, 203 - 397
Target Start/End: Original strand, 44407221 - 44407419
Alignment:
| Q |
203 |
tttgagattcatacaaacaaaaaattaaaatatgcagaagtttaaagttctattggttctattcctctcagtatgccaaggtgctttgtcttatacagat |
302 |
Q |
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| T |
44407221 |
tttgagattcatacaaacaaaaaattaaaatatgcagaagtttaaagttctattggttctattcctctcagtatgccaaggtgctttgtcttatacagat |
44407320 |
T |
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| Q |
303 |
ggtaagttcttaattcccaacactatatgcaatgtaatggtgttttgatttcaatca----acttaattcattgatgttagtatttattgctaactaat |
397 |
Q |
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| T |
44407321 |
ggtaagttcttaattcccaacactatatgcaatgtaatggtgttttgatttcaatcaccttaattaattcattgatgttagtatttattgctaactaat |
44407419 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 11 - 147
Target Start/End: Original strand, 44407024 - 44407160
Alignment:
| Q |
11 |
aatactaacatgtatgtattcagggcaaagccatctcttgctggaaaatttaggataggatagttccagtggcattgatgttattttttgctgaatttag |
110 |
Q |
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| T |
44407024 |
aatactaacatgtatgtattcagggcaaagccatctcttgctggaaaatttaggataggatagttccagtggcattgatgttattttttgctgaatttag |
44407123 |
T |
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| Q |
111 |
tggcattttcattttatgattcaaataaaaccctgtg |
147 |
Q |
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| T |
44407124 |
tggcattttcattttatgattcaaataaaaccctgtg |
44407160 |
T |
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