View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11557A_low_401 (Length: 227)
Name: NF11557A_low_401
Description: NF11557A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11557A_low_401 |
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Alignment Details
Target: chr1 (Bit Score: 171; Significance: 6e-92; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 171; E-Value: 6e-92
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 49165608 - 49165389
Alignment:
| Q |
1 |
gcagtgagtttctttgagtttccttcgttcctgaggtatgccaacaaaagtatataatcaatttacaaataagctatgtctatttgtaaaactacaatag |
100 |
Q |
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| T |
49165608 |
gcagtgagtttctttgagtttccttcgttcctgaggtatgccaacaaaagtatataatcaatttacaaataagctatgtctatttgtaaaactacaatag |
49165509 |
T |
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| Q |
101 |
ttgcannnnnnnncttgattctagtgttgtcaatcgtgagtcatnnnnnnntagaggattattcaagctgcattgtagtgccactaaacaacattttgta |
200 |
Q |
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| T |
49165508 |
ttgca-tttttttcttgattctagtgttgtcaatcgtgagtcataaaaaaatagaggattattcaagctgcattgtagtgccactaaacaacattttgta |
49165410 |
T |
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| Q |
201 |
ttaaatagtgtatggtagaac |
221 |
Q |
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||||||||||||||||||||| |
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| T |
49165409 |
ttaaatagtgtatggtagaac |
49165389 |
T |
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Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 13 - 85
Target Start/End: Complemental strand, 43752004 - 43751932
Alignment:
| Q |
13 |
tttgagtttccttcgttcctgaggtatgccaacaaaagtatataatcaatttacaaataagctatgtctattt |
85 |
Q |
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|||||||| ||||| ||||| ||||||||||||||| | | || |||||||||||||||||| ||||||| |
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| T |
43752004 |
tttgagttgccttctttcctatagtatgccaacaaaagcaaaaaaacaatttacaaataagctacatctattt |
43751932 |
T |
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