View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11557A_low_402 (Length: 227)
Name: NF11557A_low_402
Description: NF11557A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11557A_low_402 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 141; Significance: 4e-74; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 141; E-Value: 4e-74
Query Start/End: Original strand, 83 - 227
Target Start/End: Complemental strand, 2282270 - 2282126
Alignment:
| Q |
83 |
ctgacgcaattaactccttattctaagaatttgactcttatatgtaaacattattttggtgttaataattttgcagtatgtggtactagctccttgggtg |
182 |
Q |
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| T |
2282270 |
ctgacgcaattaactccttattctaagaatttgactcttatatgtaaacattattttggtgttaataattttgcagtatgtggtactagctccttgggtg |
2282171 |
T |
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| Q |
183 |
attcacagcacatattctttgatagtgacggataagagtgaaagg |
227 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
2282170 |
attcacagcacatattctttgatagtgaaggataagagtgaaagg |
2282126 |
T |
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