View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11557A_low_41 (Length: 401)
Name: NF11557A_low_41
Description: NF11557A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11557A_low_41 |
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Alignment Details
Target: chr4 (Bit Score: 297; Significance: 1e-167; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 20 - 392
Target Start/End: Original strand, 7627372 - 7627745
Alignment:
| Q |
20 |
taaaaccaccatcttcagttcttcctcttcttgaatttgacaccttcaagagttgttcttcttcctttttcttgtgaagtgtcattcttgcttcttggac |
119 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
7627372 |
taaaaccaccatctccagttcttcctcttcttgaatttgacaccttcaagagttgttcttcttcctttttcttgtgaagtgtcattcttgcttcttgaac |
7627471 |
T |
|
| Q |
120 |
aagaaaattgctttgcagttcattaatggaaaaagtggtaacgtcattggattctcctatggagcaaaccacatagttgaatcttgaagtcatggaccta |
219 |
Q |
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||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7627472 |
aagaaaattgctttgcagttcattaatggaaaaagtggtaaggtcattggattcttctatggagcaaaccacatagttgaatcttgaagtcatggaccta |
7627571 |
T |
|
| Q |
220 |
agaatcttctccaccatagttgtttttcctttctttctccatgtgcagatatcttgtttgcaattgttaggcatgttgcaaaatactcatcagtcacttt |
319 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||| | ||||||||||||||||||||||||| |
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| T |
7627572 |
agaatcttctccaccatagttgtttttcctttctttctccatgtgcagacatcttgtttgcaattgctagggttcttgcaaaatactcatcagtcacttt |
7627671 |
T |
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| Q |
320 |
gaatgtgacagttaattagaaac-nnnnnnnttatataaaagctatagttataaagaaacggagggagtataat |
392 |
Q |
| |
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||| ||||||||||||||||||| |||| |||||| ||||||||||||||||||||||||||||||| |
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| T |
7627672 |
gaaagtgacagttaattagaaacaaaaaaatttatgtaaaagttatagttataaagaaacggagggagtataat |
7627745 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 257; Significance: 1e-143; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 20 - 392
Target Start/End: Complemental strand, 8921399 - 8921022
Alignment:
| Q |
20 |
taaaaccaccatcttcagttcttcctcttcttgaatttgacaccttcaagagttgttcttcttcctttttcttgtgaagtgtcattcttgcttcttggac |
119 |
Q |
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|||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| || |
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| T |
8921399 |
taaaaccaccatctccagctcttcctcttcttgaatttgacaccttcaagagttgttcttcttcctttttcttgtgaagtgtcattcatgcttcttgaac |
8921300 |
T |
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| Q |
120 |
aagaaaattgctttgcagttcattaatggaaaaagtggtaacgtcattggattctcctatggagcaaaccacatagttgaatcttgaagtcatggaccta |
219 |
Q |
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||||||||||||||||||||||||||||||||||| |||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8921299 |
aagaaaattgctttgcagttcattaatggaaaaagcggtaacatcattggattcttctatggagcaaaccacatagttgaatcttgaagtcatggaccta |
8921200 |
T |
|
| Q |
220 |
agaatcttctccaccatagttgtttttcctttctttctccatgtgcagatatcttgtttgcaattgttaggcatgttgcaaaatactcatc-----agtc |
314 |
Q |
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||||||||||||||||||||| ||||||||||||||||||||||||| | |||||||||||||||| |||| | |||||||||||||||| | || |
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| T |
8921199 |
agaatcttctccaccatagttttttttcctttctttctccatgtgcatacatcttgtttgcaattgctagggttcttgcaaaatactcatccactgattc |
8921100 |
T |
|
| Q |
315 |
actttgaatgtgacagttaattagaaacnnnnnnnttatataaaagctatagttataaagaaacggagggagtataat |
392 |
Q |
| |
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|||||||| ||||||||||||||||||| |||| ||||||| | |||||||||| ||||||||||||||||| |
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| T |
8921099 |
actttgaaagtgacagttaattagaaacaaaaaaattatgtaaaagcgacagttataaaggaacggagggagtataat |
8921022 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 58; Significance: 3e-24; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 101 - 230
Target Start/End: Original strand, 35372092 - 35372221
Alignment:
| Q |
101 |
tcattcttgcttcttggacaagaaaattgctttgcagttcattaatggaaaaagtggtaacgtcattggattctcctatggagcaaaccacatagttgaa |
200 |
Q |
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|||||||||||||||| ||||| || ||| ||||||||||| ||| |||| ||||||||| ||||| |||||| |||| | || |||||||||||||| |
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| T |
35372092 |
tcattcttgcttcttgcacaagtaatctgcattgcagttcatcaatagaaagagtggtaacatcattagattcttctatagtacacaccacatagttgaa |
35372191 |
T |
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| Q |
201 |
tcttgaagtcatggacctaagaatcttctc |
230 |
Q |
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|||||| |||||||| |||| ||||||||| |
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| T |
35372192 |
tcttgatgtcatggatctaaaaatcttctc |
35372221 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 170 - 230
Target Start/End: Original strand, 24659053 - 24659113
Alignment:
| Q |
170 |
attctcctatggagcaaaccacatagttgaatcttgaagtcatggacctaagaatcttctc |
230 |
Q |
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||||| |||| ||| | |||||||||||||||||||| |||||||| | ||||||||||| |
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| T |
24659053 |
attcttctatagagtagaccacatagttgaatcttgatgtcatggatatgagaatcttctc |
24659113 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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