View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11557A_low_410 (Length: 223)
Name: NF11557A_low_410
Description: NF11557A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11557A_low_410 |
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Alignment Details
Target: chr7 (Bit Score: 155; Significance: 2e-82; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 22 - 204
Target Start/End: Original strand, 28855609 - 28855791
Alignment:
| Q |
22 |
ttcgtatcgttggttggaagtagaggaaagactnnnnnnnngacctagagatcaatgagttagagatatgatacatgaaataacattctgacgttgtttg |
121 |
Q |
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| T |
28855609 |
ttcgtatcgttggttggaagtagaggaaagattaaaaaaaagacctagagatcaatgagttagagatatgatacatgaaataacattctgacgttgtttg |
28855708 |
T |
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| Q |
122 |
atccatgtagccgatcctatttaatggagtaagacttggtggttgtttcaattcaacccatatgagagacgcaccacatcttt |
204 |
Q |
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| T |
28855709 |
atccatgtagccgatcctatttaatggagtaagacttggtggttgtttcaattcaacccatatgagagacgcaccacatcttt |
28855791 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 147; Significance: 1e-77; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 22 - 204
Target Start/End: Original strand, 17995843 - 17996025
Alignment:
| Q |
22 |
ttcgtatcgttggttggaagtagaggaaagactnnnnnnnngacctagagatcaatgagttagagatatgatacatgaaataacattctgacgttgtttg |
121 |
Q |
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| T |
17995843 |
ttcgtatcgttggttggaagtagaggaaagactaaaaaaaagacctagagatcaatgatttagagatatgatacatgaaataacattttgacgttgtttg |
17995942 |
T |
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| Q |
122 |
atccatgtagccgatcctatttaatggagtaagacttggtggttgtttcaattcaacccatatgagagacgcaccacatcttt |
204 |
Q |
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| T |
17995943 |
atccatgtagccgatcctatttaatggagtaagacttggttgttgtttcaattcaacccatatgagagacgcaccacatcttt |
17996025 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 87 - 133
Target Start/End: Complemental strand, 41971353 - 41971307
Alignment:
| Q |
87 |
atatgatacatgaaataacattctgacgttgtttgatccatgtagcc |
133 |
Q |
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| T |
41971353 |
atatgatatatgatagaacattatgacgttgtttgatccatgtagcc |
41971307 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 85 - 141
Target Start/End: Complemental strand, 7150396 - 7150340
Alignment:
| Q |
85 |
agatatgatacatgaaataacattctgacgttgtttgatccatgtagccgatcctat |
141 |
Q |
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|||||| ||| |||| |||||||| || ||||| ||||||||||||||||| ||||| |
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| T |
7150396 |
agatattatatatgacataacattatggcgttggttgatccatgtagccgagcctat |
7150340 |
T |
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