View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11557A_low_42 (Length: 400)
Name: NF11557A_low_42
Description: NF11557A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11557A_low_42 |
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Alignment Details
Target: chr5 (Bit Score: 304; Significance: 1e-171; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 7 - 394
Target Start/End: Original strand, 7733616 - 7734004
Alignment:
| Q |
7 |
tgatatgaaacatcatgtacaacacctcaatgactaaaccatagacttcattcttcatcgatcacttgagcccaatattgaagaatcatcgatcgaaaca |
106 |
Q |
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| T |
7733616 |
tgatatgaaacatcatgtacaacgcttcaatgactaaaccatagatttcattcttcatcgatcacttgagcccaatattgaagaatcatcgatcgaaaca |
7733715 |
T |
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| Q |
107 |
gaccttcactaacttccagacgaattcttaccaacgcctagaaaggcatcattcattacaaaagcaatgtacaccatttctattatttcaatacctcaca |
206 |
Q |
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| T |
7733716 |
gaccttcactaacttccagacgacttcttaccaatgcctagaaaggcctcattcattacaaaagcaatgtacaccatttctattatttcaatgcctcaca |
7733815 |
T |
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| Q |
207 |
ctctttgttttcatattgacttgagtatccatcttagttttattttggagaggatataatttagtttttggttattaactttgtgtttagaaaatattat |
306 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||| || ||||||| |
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| T |
7733816 |
ctctttgttttcatattgacttgagtatccatcttagttttattttggagcggatgtaatttagtttttggttattaactttgtgtttataacatattat |
7733915 |
T |
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| Q |
307 |
aa-nnnnnnnaaacaatacaagcggaaagacggacacctgagtatctatctttccgctctttttattgcgtcaatgcgtataaattttc |
394 |
Q |
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| T |
7733916 |
aattttttttaaacaatacaagcggaaagacggacacctgaatatccatctttctgctctttttattgcgtcaatgcgtataaattttc |
7734004 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 358 - 391
Target Start/End: Complemental strand, 48458269 - 48458236
Alignment:
| Q |
358 |
tccgctctttttattgcgtcaatgcgtataaatt |
391 |
Q |
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| T |
48458269 |
tccgctctttttattgcgttaatgcgtataaatt |
48458236 |
T |
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