View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11557A_low_423 (Length: 219)

Name: NF11557A_low_423
Description: NF11557A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11557A_low_423
NF11557A_low_423
[»] chr6 (14 HSPs)
chr6 (19-171)||(31045598-31045750)
chr6 (173-219)||(5739788-5739834)
chr6 (172-219)||(17181960-17182007)
chr6 (173-219)||(24900776-24900822)
chr6 (172-209)||(9395360-9395397)
chr6 (171-216)||(23632664-23632709)
chr6 (171-219)||(8505798-8505846)
chr6 (171-219)||(8645308-8645355)
chr6 (171-219)||(8778897-8778944)
chr6 (171-219)||(17551403-17551451)
chr6 (171-219)||(22079588-22079635)
chr6 (173-201)||(26595350-26595378)
chr6 (171-199)||(30457433-30457461)
chr6 (171-199)||(32316972-32317000)
[»] chr7 (24 HSPs)
chr7 (171-219)||(41018662-41018710)
chr7 (171-219)||(31289389-31289437)
chr7 (171-219)||(12007210-12007258)
chr7 (171-219)||(13152592-13152639)
chr7 (171-219)||(21103011-21103059)
chr7 (175-219)||(22836196-22836240)
chr7 (175-219)||(33057382-33057426)
chr7 (171-219)||(47448825-47448873)
chr7 (172-219)||(22605359-22605406)
chr7 (171-210)||(27704434-27704473)
chr7 (172-219)||(32777731-32777778)
chr7 (172-219)||(43159599-43159646)
chr7 (171-209)||(27570354-27570392)
chr7 (172-210)||(40207833-40207871)
chr7 (171-209)||(45420083-45420121)
chr7 (171-219)||(2008882-2008930)
chr7 (171-199)||(9428435-9428463)
chr7 (171-219)||(9792765-9792813)
chr7 (171-199)||(40112998-40113026)
chr7 (170-218)||(40231731-40231778)
chr7 (171-219)||(40417774-40417822)
chr7 (171-199)||(43942648-43942676)
chr7 (171-219)||(44184583-44184631)
chr7 (171-219)||(44895597-44895644)
[»] chr3 (26 HSPs)
chr3 (171-219)||(45293053-45293101)
chr3 (172-219)||(23553613-23553660)
chr3 (169-219)||(32362930-32362980)
chr3 (171-219)||(32146010-32146058)
chr3 (169-209)||(35368619-35368659)
chr3 (172-219)||(14207282-14207329)
chr3 (172-219)||(14215030-14215077)
chr3 (172-219)||(51137060-51137107)
chr3 (172-210)||(25188498-25188536)
chr3 (171-217)||(40367607-40367653)
chr3 (171-217)||(50559238-50559284)
chr3 (172-217)||(6178452-6178496)
chr3 (172-217)||(52963342-52963387)
chr3 (171-219)||(288724-288772)
chr3 (171-219)||(9862532-9862580)
chr3 (171-219)||(10811134-10811182)
chr3 (171-219)||(19150343-19150391)
chr3 (171-199)||(20275732-20275760)
chr3 (171-219)||(27168706-27168754)
chr3 (171-219)||(37894267-37894315)
chr3 (171-219)||(40159863-40159910)
chr3 (171-219)||(41637304-41637352)
chr3 (171-219)||(46019461-46019509)
chr3 (171-219)||(46623906-46623953)
chr3 (171-219)||(49417574-49417622)
chr3 (171-219)||(52939652-52939699)
[»] chr2 (15 HSPs)
chr2 (171-219)||(7438567-7438615)
chr2 (171-219)||(14876956-14877004)
chr2 (171-219)||(27490755-27490802)
chr2 (171-219)||(41042253-41042300)
chr2 (171-219)||(43057063-43057111)
chr2 (171-210)||(18510674-18510713)
chr2 (171-210)||(28494858-28494897)
chr2 (172-219)||(40210092-40210139)
chr2 (175-217)||(26481116-26481158)
chr2 (173-210)||(40635714-40635751)
chr2 (171-219)||(6336251-6336299)
chr2 (175-219)||(8848720-8848763)
chr2 (171-199)||(9647143-9647171)
chr2 (171-219)||(18254234-18254281)
chr2 (171-219)||(24766151-24766199)
[»] chr8 (24 HSPs)
chr8 (172-219)||(13106477-13106524)
chr8 (171-219)||(33100493-33100541)
chr8 (172-219)||(12284294-12284341)
chr8 (172-219)||(23754731-23754778)
chr8 (172-219)||(25987811-25987858)
chr8 (172-219)||(26026896-26026943)
chr8 (173-219)||(10839506-10839552)
chr8 (173-219)||(40528749-40528795)
chr8 (172-217)||(5601013-5601058)
chr8 (172-217)||(5639562-5639607)
chr8 (172-209)||(41776186-41776223)
chr8 (172-217)||(42733591-42733636)
chr8 (171-219)||(67185-67233)
chr8 (171-219)||(1068605-1068653)
chr8 (171-219)||(5771996-5772044)
chr8 (171-219)||(6440080-6440128)
chr8 (175-219)||(12172141-12172185)
chr8 (175-219)||(12416569-12416613)
chr8 (170-210)||(18550124-18550164)
chr8 (171-219)||(33107891-33107939)
chr8 (171-219)||(35067159-35067207)
chr8 (171-219)||(36023083-36023131)
chr8 (173-209)||(37172072-37172108)
chr8 (171-219)||(41955928-41955976)
[»] chr4 (24 HSPs)
chr4 (160-199)||(46212958-46212997)
chr4 (171-219)||(20760254-20760302)
chr4 (171-219)||(20766645-20766693)
chr4 (171-219)||(42815403-42815451)
chr4 (171-219)||(50890098-50890145)
chr4 (171-219)||(51255745-51255793)
chr4 (171-219)||(51734657-51734705)
chr4 (171-210)||(2004222-2004261)
chr4 (171-210)||(7146153-7146192)
chr4 (172-219)||(10250540-10250586)
chr4 (171-209)||(31413809-31413847)
chr4 (172-210)||(43511680-43511718)
chr4 (172-209)||(4974111-4974148)
chr4 (172-209)||(36871191-36871228)
chr4 (171-219)||(54128051-54128100)
chr4 (171-219)||(4914905-4914953)
chr4 (172-212)||(4949265-4949305)
chr4 (171-219)||(12241057-12241104)
chr4 (171-219)||(23369357-23369404)
chr4 (171-199)||(27964986-27965014)
chr4 (171-219)||(33820361-33820408)
chr4 (171-199)||(39195054-39195082)
chr4 (171-219)||(39478434-39478481)
chr4 (171-219)||(54909322-54909370)
[»] chr5 (17 HSPs)
chr5 (171-217)||(32872924-32872970)
chr5 (171-219)||(1274357-1274404)
chr5 (171-219)||(1293110-1293158)
chr5 (171-219)||(13089806-13089854)
chr5 (171-219)||(24468310-24468358)
chr5 (172-219)||(16594400-16594447)
chr5 (172-219)||(31748336-31748383)
chr5 (171-210)||(42446324-42446363)
chr5 (171-217)||(18660758-18660803)
chr5 (171-209)||(38919862-38919900)
chr5 (171-217)||(43214085-43214131)
chr5 (171-219)||(611863-611911)
chr5 (171-219)||(14011316-14011364)
chr5 (171-219)||(18695317-18695365)
chr5 (172-216)||(21155987-21156031)
chr5 (171-219)||(33037519-33037566)
chr5 (172-208)||(35301483-35301519)
[»] scaffold0432 (1 HSPs)
scaffold0432 (171-219)||(6544-6592)
[»] chr1 (25 HSPs)
chr1 (171-219)||(9566985-9567033)
chr1 (174-218)||(33466066-33466110)
chr1 (171-219)||(48983692-48983740)
chr1 (172-219)||(649768-649815)
chr1 (172-219)||(19947765-19947812)
chr1 (171-217)||(15083077-15083122)
chr1 (172-217)||(49020430-49020475)
chr1 (171-219)||(1689390-1689438)
chr1 (171-219)||(2571634-2571681)
chr1 (171-219)||(4213071-4213119)
chr1 (171-219)||(8350221-8350268)
chr1 (171-219)||(8905727-8905774)
chr1 (171-219)||(9987950-9987998)
chr1 (171-219)||(17082767-17082815)
chr1 (171-219)||(21433425-21433473)
chr1 (171-219)||(27742616-27742664)
chr1 (171-219)||(32915096-32915144)
chr1 (171-219)||(33100807-33100854)
chr1 (171-219)||(34008179-34008227)
chr1 (171-219)||(42824453-42824501)
chr1 (171-219)||(44519176-44519223)
chr1 (171-219)||(47214207-47214255)
chr1 (171-219)||(48858822-48858870)
chr1 (171-199)||(49065408-49065436)
chr1 (171-199)||(49647194-49647222)
[»] scaffold0299 (1 HSPs)
scaffold0299 (172-210)||(18831-18869)
[»] scaffold0150 (1 HSPs)
scaffold0150 (172-210)||(30536-30574)
[»] scaffold0056 (1 HSPs)
scaffold0056 (170-199)||(76663-76692)
[»] scaffold0018 (1 HSPs)
scaffold0018 (92-133)||(171884-171925)
[»] scaffold0504 (1 HSPs)
scaffold0504 (173-209)||(11159-11195)
[»] scaffold0034 (1 HSPs)
scaffold0034 (171-219)||(101930-101978)


Alignment Details
Target: chr6 (Bit Score: 153; Significance: 3e-81; HSPs: 14)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 19 - 171
Target Start/End: Complemental strand, 31045750 - 31045598
Alignment:
Q  19 aacaatgccatcacactaaaaattagatactcatatatattctactatcaactatgtgtccccgatgcaaatttaaagcaattcctatgaattgtcgaaa 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31045750 aacaatgccatcacactaaaaattagatactcatatatattctactatcaactatgtgtccccgatgcaaatttaaagcaattcctatgaattgtcgaaa 31045651  T
Q  119 tattcatatataaatcagaaaattttggttcaaatagttactatatataggga 171  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31045650 tattcatatataaatcagaaaattttggttcaaatagttactatatataggga 31045598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 173 - 219
Target Start/End: Complemental strand, 5739834 - 5739788
Alignment:
Q  173 agaaatgatatttgaacaactatttttgaacaacttttctgacaact 219  Q
    |||| |||||||||||||||||||||| |||||||||| ||||||||    
T  5739834 agaattgatatttgaacaactattttttaacaacttttgtgacaact 5739788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 172 - 219
Target Start/End: Complemental strand, 17182007 - 17181960
Alignment:
Q  172 gagaaatgatatttgaacaactatttttgaacaacttttctgacaact 219  Q
    |||||||||||||| |||||| ||||||||||||||||| | ||||||    
T  17182007 gagaaatgatatttaaacaaccatttttgaacaacttttgtaacaact 17181960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 173 - 219
Target Start/End: Original strand, 24900776 - 24900822
Alignment:
Q  173 agaaatgatatttgaacaactatttttgaacaacttttctgacaact 219  Q
    |||||||||||||||||||| ||||||  ||||||||| ||||||||    
T  24900776 agaaatgatatttgaacaaccattttttgacaacttttgtgacaact 24900822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 172 - 209
Target Start/End: Complemental strand, 9395397 - 9395360
Alignment:
Q  172 gagaaatgatatttgaacaactatttttgaacaacttt 209  Q
    ||||||||||||||| ||||||||||||| ||||||||    
T  9395397 gagaaatgatatttgtacaactatttttgtacaacttt 9395360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 171 - 216
Target Start/End: Complemental strand, 23632709 - 23632664
Alignment:
Q  171 agagaaatgatatttgaacaactatttttgaacaacttttctgaca 216  Q
    |||||||||||||||||||||| | |||| |||||||||| |||||    
T  23632709 agagaaatgatatttgaacaaccacttttaaacaacttttgtgaca 23632664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 171 - 219
Target Start/End: Complemental strand, 8505846 - 8505798
Alignment:
Q  171 agagaaatgatatttgaacaactatttttgaacaacttttctgacaact 219  Q
    |||||||||||||||||||||  ||||||  ||||||||| ||||||||    
T  8505846 agagaaatgatatttgaacaatcattttttgacaacttttgtgacaact 8505798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 171 - 219
Target Start/End: Original strand, 8645308 - 8645355
Alignment:
Q  171 agagaaatgatatttgaacaactatttttgaacaacttttctgacaact 219  Q
    ||||||||||||||||||||||  |||||| ||||||||| ||||||||    
T  8645308 agagaaatgatatttgaacaacactttttg-acaacttttgtgacaact 8645355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 171 - 219
Target Start/End: Complemental strand, 8778944 - 8778897
Alignment:
Q  171 agagaaatgatatttgaacaactatttttgaacaacttttctgacaact 219  Q
    |||||||||||||||| ||||| |||||| |||||||||| ||||||||    
T  8778944 agagaaatgatatttgtacaaccattttttaacaactttt-tgacaact 8778897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 171 - 219
Target Start/End: Complemental strand, 17551451 - 17551403
Alignment:
Q  171 agagaaatgatatttgaacaactatttttgaacaacttttctgacaact 219  Q
    |||||||||||||||||||||| ||||||  ||||||||| | ||||||    
T  17551451 agagaaatgatatttgaacaaccattttttgacaacttttgtaacaact 17551403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 171 - 219
Target Start/End: Complemental strand, 22079635 - 22079588
Alignment:
Q  171 agagaaatgatatttgaacaactatttttgaacaacttttctgacaact 219  Q
    |||||||||||||||||||||| ||||||  ||||||||| ||||||||    
T  22079635 agagaaatgatatttgaacaaccattttt-tacaacttttgtgacaact 22079588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 173 - 201
Target Start/End: Original strand, 26595350 - 26595378
Alignment:
Q  173 agaaatgatatttgaacaactatttttga 201  Q
    |||||||||||||||||||||||||||||    
T  26595350 agaaatgatatttgaacaactatttttga 26595378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 171 - 199
Target Start/End: Original strand, 30457433 - 30457461
Alignment:
Q  171 agagaaatgatatttgaacaactattttt 199  Q
    |||||||||||||||||||||||||||||    
T  30457433 agagaaatgatatttgaacaactattttt 30457461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 171 - 199
Target Start/End: Complemental strand, 32317000 - 32316972
Alignment:
Q  171 agagaaatgatatttgaacaactattttt 199  Q
    |||||||||||||||||||||||||||||    
T  32317000 agagaaatgatatttgaacaactattttt 32316972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 24)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 171 - 219
Target Start/End: Original strand, 41018662 - 41018710
Alignment:
Q  171 agagaaatgatatttgaacaactatttttgaacaacttttctgacaact 219  Q
    |||||||||||||||||||||||||||||| ||||||||| ||||||||    
T  41018662 agagaaatgatatttgaacaactatttttggacaacttttgtgacaact 41018710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 171 - 219
Target Start/End: Complemental strand, 31289437 - 31289389
Alignment:
Q  171 agagaaatgatatttgaacaactatttttgaacaacttttctgacaact 219  Q
    |||||||||||||||||||||| | |||||||||| |||||||||||||    
T  31289437 agagaaatgatatttgaacaaccacttttgaacaatttttctgacaact 31289389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 171 - 219
Target Start/End: Complemental strand, 12007258 - 12007210
Alignment:
Q  171 agagaaatgatatttgaacaactatttttgaacaacttttctgacaact 219  Q
    |||||||||||||||||||||| ||||||  ||||||||| ||||||||    
T  12007258 agagaaatgatatttgaacaaccattttttgacaacttttgtgacaact 12007210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 171 - 219
Target Start/End: Original strand, 13152592 - 13152639
Alignment:
Q  171 agagaaatgatatttgaacaactatttttgaacaacttttctgacaact 219  Q
    |||||||||||||||||||||| ||||||| ||||||||| ||||||||    
T  13152592 agagaaatgatatttgaacaaccatttttg-acaacttttgtgacaact 13152639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 171 - 219
Target Start/End: Original strand, 21103011 - 21103059
Alignment:
Q  171 agagaaatgatatttgaacaactatttttgaacaacttttctgacaact 219  Q
    |||||||| |||||||||||||||||||| ||||| |||| ||||||||    
T  21103011 agagaaattatatttgaacaactatttttaaacaatttttgtgacaact 21103059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 175 - 219
Target Start/End: Original strand, 22836196 - 22836240
Alignment:
Q  175 aaatgatatttgaacaactatttttgaacaacttttctgacaact 219  Q
    ||||||||||||||||||| ||||| |||||||||| ||||||||    
T  22836196 aaatgatatttgaacaactttttttaaacaacttttatgacaact 22836240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 175 - 219
Target Start/End: Original strand, 33057382 - 33057426
Alignment:
Q  175 aaatgatatttgaacaactatttttgaacaacttttctgacaact 219  Q
    ||||||||||||||||||||||||| |||||||||| | ||||||    
T  33057382 aaatgatatttgaacaactattttttaacaacttttgtaacaact 33057426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 171 - 219
Target Start/End: Original strand, 47448825 - 47448873
Alignment:
Q  171 agagaaatgatatttgaacaactatttttgaacaacttttctgacaact 219  Q
    |||||||||||||||||||||| ||||||  ||||||||| ||||||||    
T  47448825 agagaaatgatatttgaacaaccattttttgacaacttttgtgacaact 47448873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 172 - 219
Target Start/End: Original strand, 22605359 - 22605406
Alignment:
Q  172 gagaaatgatatttgaacaactatttttgaacaacttttctgacaact 219  Q
    ||||||||||||||||||||||| |||| |||||||||| || |||||    
T  22605359 gagaaatgatatttgaacaactaatttttaacaacttttgtggcaact 22605406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 171 - 210
Target Start/End: Original strand, 27704434 - 27704473
Alignment:
Q  171 agagaaatgatatttgaacaactatttttgaacaactttt 210  Q
    |||||||||||||||| ||||||||||||| |||||||||    
T  27704434 agagaaatgatatttgtacaactatttttgtacaactttt 27704473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 172 - 219
Target Start/End: Complemental strand, 32777778 - 32777731
Alignment:
Q  172 gagaaatgatatttgaacaactatttttgaacaacttttctgacaact 219  Q
    ||||||||||||||||||||| ||||||  ||||||||| ||||||||    
T  32777778 gagaaatgatatttgaacaaccattttttgacaacttttatgacaact 32777731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 172 - 219
Target Start/End: Complemental strand, 43159646 - 43159599
Alignment:
Q  172 gagaaatgatatttgaacaactatttttgaacaacttttctgacaact 219  Q
    ||||||||||||||||||||| |||||| ||||| |||| ||||||||    
T  43159646 gagaaatgatatttgaacaaccattttttaacaatttttgtgacaact 43159599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 171 - 209
Target Start/End: Original strand, 27570354 - 27570392
Alignment:
Q  171 agagaaatgatatttgaacaactatttttgaacaacttt 209  Q
    ||||||||||||||||||||||||||||| || ||||||    
T  27570354 agagaaatgatatttgaacaactattttttaataacttt 27570392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 172 - 210
Target Start/End: Complemental strand, 40207871 - 40207833
Alignment:
Q  172 gagaaatgatatttgaacaactatttttgaacaactttt 210  Q
    ||||||||||||||| ||||||||||||| |||||||||    
T  40207871 gagaaatgatatttgtacaactatttttgtacaactttt 40207833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 171 - 209
Target Start/End: Complemental strand, 45420121 - 45420083
Alignment:
Q  171 agagaaatgatatttgaacaactatttttgaacaacttt 209  Q
    |||||||||||||||||||||||||||||  ||||||||    
T  45420121 agagaaatgatatttgaacaactattttttgacaacttt 45420083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 171 - 219
Target Start/End: Complemental strand, 2008930 - 2008882
Alignment:
Q  171 agagaaatgatatttgaacaactatttttgaacaacttttctgacaact 219  Q
    |||||||||||||||||||||| | ||||  ||||||||| ||||||||    
T  2008930 agagaaatgatatttgaacaaccactttttgacaacttttgtgacaact 2008882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 171 - 199
Target Start/End: Original strand, 9428435 - 9428463
Alignment:
Q  171 agagaaatgatatttgaacaactattttt 199  Q
    |||||||||||||||||||||||||||||    
T  9428435 agagaaatgatatttgaacaactattttt 9428463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 171 - 219
Target Start/End: Original strand, 9792765 - 9792813
Alignment:
Q  171 agagaaatgatatttgaacaactatttttgaacaacttttctgacaact 219  Q
    |||||||||||||||||||||| | |||| |||||||||| ||| ||||    
T  9792765 agagaaatgatatttgaacaaccacttttaaacaacttttgtgataact 9792813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 171 - 199
Target Start/End: Complemental strand, 40113026 - 40112998
Alignment:
Q  171 agagaaatgatatttgaacaactattttt 199  Q
    |||||||||||||||||||||||||||||    
T  40113026 agagaaatgatatttgaacaactattttt 40112998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 170 - 218
Target Start/End: Complemental strand, 40231778 - 40231731
Alignment:
Q  170 gagagaaatgatatttgaacaactatttttgaacaacttttctgacaac 218  Q
    ||||||||||||||||| |||| |||||||| ||||||||| |||||||    
T  40231778 gagagaaatgatatttgtacaattatttttg-acaacttttgtgacaac 40231731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 171 - 219
Target Start/End: Original strand, 40417774 - 40417822
Alignment:
Q  171 agagaaatgatatttgaacaactatttttgaacaacttttctgacaact 219  Q
    |||||||| ||||||||||||||||||||  |||| |||| ||||||||    
T  40417774 agagaaataatatttgaacaactattttttgacaatttttgtgacaact 40417822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 171 - 199
Target Start/End: Original strand, 43942648 - 43942676
Alignment:
Q  171 agagaaatgatatttgaacaactattttt 199  Q
    |||||||||||||||||||||||||||||    
T  43942648 agagaaatgatatttgaacaactattttt 43942676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 171 - 219
Target Start/End: Complemental strand, 44184631 - 44184583
Alignment:
Q  171 agagaaatgatatttgaacaactatttttgaacaacttttctgacaact 219  Q
    |||||||||||||||||||| |||||||   ||||||||| ||||||||    
T  44184631 agagaaatgatatttgaacatctattttgcgacaacttttgtgacaact 44184583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 171 - 219
Target Start/End: Complemental strand, 44895644 - 44895597
Alignment:
Q  171 agagaaatgatatttgaacaactatttttgaacaacttttctgacaact 219  Q
    |||||||||||||||||||||| ||||||  ||||||||| ||||||||    
T  44895644 agagaaatgatatttgaacaaccattttt-tacaacttttgtgacaact 44895597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 37; Significance: 0.000000000005; HSPs: 26)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 171 - 219
Target Start/End: Complemental strand, 45293101 - 45293053
Alignment:
Q  171 agagaaatgatatttgaacaactatttttgaacaacttttctgacaact 219  Q
    ||||||||||||||| ||||||||||||| |||||||||| ||||||||    
T  45293101 agagaaatgatatttaaacaactatttttaaacaacttttgtgacaact 45293053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 172 - 219
Target Start/End: Complemental strand, 23553660 - 23553613
Alignment:
Q  172 gagaaatgatatttgaacaactatttttgaacaacttttctgacaact 219  Q
    ||||||||||||||||||||||| |||| |||||||||| ||||||||    
T  23553660 gagaaatgatatttgaacaactacttttaaacaacttttgtgacaact 23553613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 169 - 219
Target Start/End: Original strand, 32362930 - 32362980
Alignment:
Q  169 ggagagaaatgatatttgaacaactatttttgaacaacttttctgacaact 219  Q
    |||||||||||||||||||||||| ||||||  ||||||||| ||||||||    
T  32362930 ggagagaaatgatatttgaacaaccattttttgacaacttttatgacaact 32362980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 171 - 219
Target Start/End: Complemental strand, 32146058 - 32146010
Alignment:
Q  171 agagaaatgatatttgaacaactatttttgaacaacttttctgacaact 219  Q
    |||||||||||||||||||||||||||||  ||||||||| ||| ||||    
T  32146058 agagaaatgatatttgaacaactattttttgacaacttttgtgataact 32146010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 169 - 209
Target Start/End: Original strand, 35368619 - 35368659
Alignment:
Q  169 ggagagaaatgatatttgaacaactatttttgaacaacttt 209  Q
    |||||||||||||||||| ||||||||||||| ||||||||    
T  35368619 ggagagaaatgatatttgtacaactatttttgtacaacttt 35368659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 172 - 219
Target Start/End: Complemental strand, 14207329 - 14207282
Alignment:
Q  172 gagaaatgatatttgaacaactatttttgaacaacttttctgacaact 219  Q
    ||||||||||||||||||||| |||||  |||||||||| ||||||||    
T  14207329 gagaaatgatatttgaacaacgattttgtaacaacttttgtgacaact 14207282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 172 - 219
Target Start/End: Complemental strand, 14215077 - 14215030
Alignment:
Q  172 gagaaatgatatttgaacaactatttttgaacaacttttctgacaact 219  Q
    ||||||||||||||||||||| |||||  |||||||||| ||||||||    
T  14215077 gagaaatgatatttgaacaacgattttgtaacaacttttgtgacaact 14215030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 172 - 219
Target Start/End: Complemental strand, 51137107 - 51137060
Alignment:
Q  172 gagaaatgatatttgaacaactatttttgaacaacttttctgacaact 219  Q
    ||||||||||||||| |||||||||||| || ||||||| ||||||||    
T  51137107 gagaaatgatatttgtacaactattttttaataacttttgtgacaact 51137060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 172 - 210
Target Start/End: Complemental strand, 25188536 - 25188498
Alignment:
Q  172 gagaaatgatatttgaacaactatttttgaacaactttt 210  Q
    ||||||||||||||||||||||||||||  |||||||||    
T  25188536 gagaaatgatatttgaacaactattttttgacaactttt 25188498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 171 - 217
Target Start/End: Original strand, 40367607 - 40367653
Alignment:
Q  171 agagaaatgatatttgaacaactatttttgaacaacttttctgacaa 217  Q
    |||||||||||||||||| |||||||||| ||||| |||| ||||||    
T  40367607 agagaaatgatatttgaataactatttttaaacaatttttgtgacaa 40367653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 171 - 217
Target Start/End: Complemental strand, 50559284 - 50559238
Alignment:
Q  171 agagaaatgatatttgaacaactatttttgaacaacttttctgacaa 217  Q
    |||||||||||||||| ||||||||||||  ||||||||| ||||||    
T  50559284 agagaaatgatatttgtacaactattttttgacaacttttgtgacaa 50559238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 172 - 217
Target Start/End: Complemental strand, 6178496 - 6178452
Alignment:
Q  172 gagaaatgatatttgaacaactatttttgaacaacttttctgacaa 217  Q
    ||||||||||||||| ||||||||||||| ||||||||| ||||||    
T  6178496 gagaaatgatatttgtacaactatttttg-acaacttttgtgacaa 6178452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 172 - 217
Target Start/End: Complemental strand, 52963387 - 52963342
Alignment:
Q  172 gagaaatgatatttgaacaactatttttgaacaacttttctgacaa 217  Q
    ||||||||||||||| ||||| |||||| |||||||||| ||||||    
T  52963387 gagaaatgatatttgtacaaccattttttaacaacttttgtgacaa 52963342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 171 - 219
Target Start/End: Original strand, 288724 - 288772
Alignment:
Q  171 agagaaatgatatttgaacaactatttttgaacaacttttctgacaact 219  Q
    |||||||||||||||||||||| ||||||  | ||||||| ||||||||    
T  288724 agagaaatgatatttgaacaacaatttttttataacttttgtgacaact 288772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 171 - 219
Target Start/End: Original strand, 9862532 - 9862580
Alignment:
Q  171 agagaaatgatatttgaacaactatttttgaacaacttttctgacaact 219  Q
    |||||||||||||||||||||| ||||||   |||||||| ||||||||    
T  9862532 agagaaatgatatttgaacaaccattttttgtcaacttttgtgacaact 9862580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 171 - 219
Target Start/End: Original strand, 10811134 - 10811182
Alignment:
Q  171 agagaaatgatatttgaacaactatttttgaacaacttttctgacaact 219  Q
    |||||||||||||||||||||| |||||   ||||||||| ||||||||    
T  10811134 agagaaatgatatttgaacaaccattttatgacaacttttgtgacaact 10811182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 171 - 219
Target Start/End: Complemental strand, 19150391 - 19150343
Alignment:
Q  171 agagaaatgatatttgaacaactatttttgaacaacttttctgacaact 219  Q
    |||||||||||||||| ||||  |||||| |||||||||| ||||||||    
T  19150391 agagaaatgatatttgtacaatcattttttaacaacttttgtgacaact 19150343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 171 - 199
Target Start/End: Complemental strand, 20275760 - 20275732
Alignment:
Q  171 agagaaatgatatttgaacaactattttt 199  Q
    |||||||||||||||||||||||||||||    
T  20275760 agagaaatgatatttgaacaactattttt 20275732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 171 - 219
Target Start/End: Complemental strand, 27168754 - 27168706
Alignment:
Q  171 agagaaatgatatttgaacaactatttttgaacaacttttctgacaact 219  Q
    |||||||||||||||||||||| |||||| || || |||| ||||||||    
T  27168754 agagaaatgatatttgaacaaccattttttaataatttttgtgacaact 27168706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 171 - 219
Target Start/End: Complemental strand, 37894315 - 37894267
Alignment:
Q  171 agagaaatgatatttgaacaactatttttgaacaacttttctgacaact 219  Q
    |||||||||||||||| ||||| |||||  |||||||||| ||||||||    
T  37894315 agagaaatgatatttgtacaaccattttctaacaacttttgtgacaact 37894267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 171 - 219
Target Start/End: Complemental strand, 40159910 - 40159863
Alignment:
Q  171 agagaaatgatatttgaacaactatttttgaacaacttttctgacaact 219  Q
    |||||||||||||||| |||||||||||  |||||||||| ||||||||    
T  40159910 agagaaatgatatttgtacaactattttctaacaactttt-tgacaact 40159863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 171 - 219
Target Start/End: Complemental strand, 41637352 - 41637304
Alignment:
Q  171 agagaaatgatatttgaacaactatttttgaacaacttttctgacaact 219  Q
    |||||| ||||||||| ||||||||||||  ||||||||| ||||||||    
T  41637352 agagaagtgatatttgtacaactattttttgacaacttttgtgacaact 41637304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 171 - 219
Target Start/End: Original strand, 46019461 - 46019509
Alignment:
Q  171 agagaaatgatatttgaacaactatttttgaacaacttttctgacaact 219  Q
    |||||||||||||||||||| |||||||   ||||||||| ||||||||    
T  46019461 agagaaatgatatttgaacatctattttgcgacaacttttgtgacaact 46019509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 171 - 219
Target Start/End: Original strand, 46623906 - 46623953
Alignment:
Q  171 agagaaatgatatttgaacaactatttttgaacaacttttctgacaact 219  Q
    |||||||||||||||||||||| ||||||  ||||||||| ||||||||    
T  46623906 agagaaatgatatttgaacaaccattttt-tacaacttttgtgacaact 46623953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 171 - 219
Target Start/End: Original strand, 49417574 - 49417622
Alignment:
Q  171 agagaaatgatatttgaacaactatttttgaacaacttttctgacaact 219  Q
    |||||||||||||||||||| |||||||   ||||||||| ||||||||    
T  49417574 agagaaatgatatttgaacatctattttatgacaacttttgtgacaact 49417622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 171 - 219
Target Start/End: Original strand, 52939652 - 52939699
Alignment:
Q  171 agagaaatgatatttgaacaactatttttgaacaacttttctgacaact 219  Q
    |||||||||||||||||||||| ||||||  ||||||||| ||||||||    
T  52939652 agagaaatgatatttgaacaaccattttt-tacaacttttgtgacaact 52939699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 37; Significance: 0.000000000005; HSPs: 15)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 171 - 219
Target Start/End: Original strand, 7438567 - 7438615
Alignment:
Q  171 agagaaatgatatttgaacaactatttttgaacaacttttctgacaact 219  Q
    |||||||||||||||||||||| |||||| |||||||||| ||||||||    
T  7438567 agagaaatgatatttgaacaaccatttttaaacaacttttatgacaact 7438615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 171 - 219
Target Start/End: Original strand, 14876956 - 14877004
Alignment:
Q  171 agagaaatgatatttgaacaactatttttgaacaacttttctgacaact 219  Q
    ||||||||||||| |||||||||||||||  ||||||||| ||||||||    
T  14876956 agagaaatgatatgtgaacaactattttttgacaacttttgtgacaact 14877004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 171 - 219
Target Start/End: Complemental strand, 27490802 - 27490755
Alignment:
Q  171 agagaaatgatatttgaacaactatttttgaacaacttttctgacaact 219  Q
    |||||||||||||||||||||| ||||||| ||||||||| ||||||||    
T  27490802 agagaaatgatatttgaacaaccatttttg-acaacttttgtgacaact 27490755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 171 - 219
Target Start/End: Original strand, 41042253 - 41042300
Alignment:
Q  171 agagaaatgatatttgaacaactatttttgaacaacttttctgacaact 219  Q
    |||||||||||||||||||||| |||||| |||||||||| ||||||||    
T  41042253 agagaaatgatatttgaacaaccattttt-aacaacttttgtgacaact 41042300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 171 - 219
Target Start/End: Original strand, 43057063 - 43057111
Alignment:
Q  171 agagaaatgatatttgaacaactatttttgaacaacttttctgacaact 219  Q
    |||||||||||||||||||||| | |||| |||||||||| ||||||||    
T  43057063 agagaaatgatatttgaacaaccactttttaacaacttttgtgacaact 43057111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 171 - 210
Target Start/End: Original strand, 18510674 - 18510713
Alignment:
Q  171 agagaaatgatatttgaacaactatttttgaacaactttt 210  Q
    |||||||||||||||||||||||||||||  |||||||||    
T  18510674 agagaaatgatatttgaacaactattttttgacaactttt 18510713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 171 - 210
Target Start/End: Original strand, 28494858 - 28494897
Alignment:
Q  171 agagaaatgatatttgaacaactatttttgaacaactttt 210  Q
    |||||||||||||||| |||||||||||| ||||||||||    
T  28494858 agagaaatgatatttgtacaactatttttaaacaactttt 28494897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 172 - 219
Target Start/End: Complemental strand, 40210139 - 40210092
Alignment:
Q  172 gagaaatgatatttgaacaactatttttgaacaacttttctgacaact 219  Q
    |||||||||||||||||||||||||||| || || |||| ||||||||    
T  40210139 gagaaatgatatttgaacaactatttttaaataatttttgtgacaact 40210092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 175 - 217
Target Start/End: Complemental strand, 26481158 - 26481116
Alignment:
Q  175 aaatgatatttgaacaactatttttgaacaacttttctgacaa 217  Q
    ||||||||||||||||| ||||||| |||||||||| ||||||    
T  26481158 aaatgatatttgaacaattattttttaacaacttttgtgacaa 26481116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 173 - 210
Target Start/End: Original strand, 40635714 - 40635751
Alignment:
Q  173 agaaatgatatttgaacaactatttttgaacaactttt 210  Q
    |||||||||||||||| |||||||||| ||||||||||    
T  40635714 agaaatgatatttgaataactattttttaacaactttt 40635751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 171 - 219
Target Start/End: Original strand, 6336251 - 6336299
Alignment:
Q  171 agagaaatgatatttgaacaactatttttgaacaacttttctgacaact 219  Q
    |||||||||||||||| ||||| |||||  |||||||||| ||||||||    
T  6336251 agagaaatgatatttgtacaaccattttctaacaacttttgtgacaact 6336299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 175 - 219
Target Start/End: Complemental strand, 8848763 - 8848720
Alignment:
Q  175 aaatgatatttgaacaactatttttgaacaacttttctgacaact 219  Q
    |||||||||||||||||| ||||||| ||||||||| ||||||||    
T  8848763 aaatgatatttgaacaaccatttttg-acaacttttgtgacaact 8848720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 171 - 199
Target Start/End: Original strand, 9647143 - 9647171
Alignment:
Q  171 agagaaatgatatttgaacaactattttt 199  Q
    |||||||||||||||||||||||||||||    
T  9647143 agagaaatgatatttgaacaactattttt 9647171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 171 - 219
Target Start/End: Complemental strand, 18254281 - 18254234
Alignment:
Q  171 agagaaatgatatttgaacaactatttttgaacaacttttctgacaact 219  Q
    |||||||||||||||||||||| ||||||  ||||||||| ||||||||    
T  18254281 agagaaatgatatttgaacaaccattttt-tacaacttttgtgacaact 18254234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 171 - 219
Target Start/End: Original strand, 24766151 - 24766199
Alignment:
Q  171 agagaaatgatatttgaacaactatttttgaacaacttttctgacaact 219  Q
    |||||||||||||||| ||||| |||||| || ||||||| ||||||||    
T  24766151 agagaaatgatatttgtacaaccattttttaataacttttgtgacaact 24766199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 36; Significance: 0.00000000002; HSPs: 24)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 172 - 219
Target Start/End: Original strand, 13106477 - 13106524
Alignment:
Q  172 gagaaatgatatttgaacaactatttttgaacaacttttctgacaact 219  Q
    ||||||||||||||||||||| ||||||| ||||||||| ||||||||    
T  13106477 gagaaatgatatttgaacaaccatttttggacaacttttttgacaact 13106524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 171 - 219
Target Start/End: Complemental strand, 33100541 - 33100493
Alignment:
Q  171 agagaaatgatatttgaacaactatttttgaacaacttttctgacaact 219  Q
    |||||||||||||||||||||| |||||  |||||||||| ||||||||    
T  33100541 agagaaatgatatttgaacaaccattttataacaacttttgtgacaact 33100493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 172 - 219
Target Start/End: Complemental strand, 12284341 - 12284294
Alignment:
Q  172 gagaaatgatatttgaacaactatttttgaacaacttttctgacaact 219  Q
    ||||||||||||||||||||| ||||||| ||||| ||| ||||||||    
T  12284341 gagaaatgatatttgaacaaccatttttggacaacgtttgtgacaact 12284294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 172 - 219
Target Start/End: Complemental strand, 23754778 - 23754731
Alignment:
Q  172 gagaaatgatatttgaacaactatttttgaacaacttttctgacaact 219  Q
    ||||||||||||||||||||| |||||| || ||||||| ||||||||    
T  23754778 gagaaatgatatttgaacaaccattttttaataacttttgtgacaact 23754731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 172 - 219
Target Start/End: Complemental strand, 25987858 - 25987811
Alignment:
Q  172 gagaaatgatatttgaacaactatttttgaacaacttttctgacaact 219  Q
    ||||||||||||||||||||| ||||||  ||||||||| ||||||||    
T  25987858 gagaaatgatatttgaacaaccatttttttacaacttttgtgacaact 25987811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 172 - 219
Target Start/End: Original strand, 26026896 - 26026943
Alignment:
Q  172 gagaaatgatatttgaacaactatttttgaacaacttttctgacaact 219  Q
    ||||||||||||||||||||| ||||||  ||||||||| ||||||||    
T  26026896 gagaaatgatatttgaacaaccattttttgacaacttttgtgacaact 26026943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 173 - 219
Target Start/End: Complemental strand, 10839552 - 10839506
Alignment:
Q  173 agaaatgatatttgaacaactatttttgaacaacttttctgacaact 219  Q
    |||||||||||||||||||| | |||| |||||||||| ||||||||    
T  10839552 agaaatgatatttgaacaaccaatttttaacaacttttgtgacaact 10839506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 173 - 219
Target Start/End: Original strand, 40528749 - 40528795
Alignment:
Q  173 agaaatgatatttgaacaactatttttgaacaacttttctgacaact 219  Q
    ||||||||||||||||||||||||||   ||||||||| ||||||||    
T  40528749 agaaatgatatttgaacaactattttgtgacaacttttatgacaact 40528795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 172 - 217
Target Start/End: Complemental strand, 5601058 - 5601013
Alignment:
Q  172 gagaaatgatatttgaacaactatttttgaacaacttttctgacaa 217  Q
    ||||||||||||||||||||| ||||||  ||||||||| ||||||    
T  5601058 gagaaatgatatttgaacaaccattttttgacaacttttgtgacaa 5601013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 172 - 217
Target Start/End: Original strand, 5639562 - 5639607
Alignment:
Q  172 gagaaatgatatttgaacaactatttttgaacaacttttctgacaa 217  Q
    ||||||||||||||||||||| ||||||  ||||||||| ||||||    
T  5639562 gagaaatgatatttgaacaaccattttttgacaacttttgtgacaa 5639607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 172 - 209
Target Start/End: Original strand, 41776186 - 41776223
Alignment:
Q  172 gagaaatgatatttgaacaactatttttgaacaacttt 209  Q
    ||||||||||||||| ||||||||||||| ||||||||    
T  41776186 gagaaatgatatttgtacaactatttttgtacaacttt 41776223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 172 - 217
Target Start/End: Complemental strand, 42733636 - 42733591
Alignment:
Q  172 gagaaatgatatttgaacaactatttttgaacaacttttctgacaa 217  Q
    ||||||||||||||||||||| |||||| ||||| |||| ||||||    
T  42733636 gagaaatgatatttgaacaaccatttttaaacaatttttgtgacaa 42733591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 171 - 219
Target Start/End: Complemental strand, 67233 - 67185
Alignment:
Q  171 agagaaatgatatttgaacaactatttttgaacaacttttctgacaact 219  Q
    |||||||||||||||| ||||| |||||  |||||||||| ||||||||    
T  67233 agagaaatgatatttgtacaaccattttctaacaacttttgtgacaact 67185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 171 - 219
Target Start/End: Original strand, 1068605 - 1068653
Alignment:
Q  171 agagaaatgatatttgaacaactatttttgaacaacttttctgacaact 219  Q
    |||||||||||||||||||||| | ||||  ||||||||| ||||||||    
T  1068605 agagaaatgatatttgaacaaccactttttgacaacttttgtgacaact 1068653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 171 - 219
Target Start/End: Complemental strand, 5772044 - 5771996
Alignment:
Q  171 agagaaatgatatttgaacaactatttttgaacaacttttctgacaact 219  Q
    |||||||||||||||||||||| ||||||  ||||||||| | ||||||    
T  5772044 agagaaatgatatttgaacaaccattttttgacaacttttgtaacaact 5771996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 171 - 219
Target Start/End: Original strand, 6440080 - 6440128
Alignment:
Q  171 agagaaatgatatttgaacaactatttttgaacaacttttctgacaact 219  Q
    |||||||||||||||| |||||||||| |  ||||||||| ||||||||    
T  6440080 agagaaatgatatttgtacaactatttctttacaacttttgtgacaact 6440128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 175 - 219
Target Start/End: Complemental strand, 12172185 - 12172141
Alignment:
Q  175 aaatgatatttgaacaactatttttgaacaacttttctgacaact 219  Q
    |||||||||||||||||| |||||| ||||| |||| ||||||||    
T  12172185 aaatgatatttgaacaaccatttttaaacaaattttgtgacaact 12172141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 175 - 219
Target Start/End: Complemental strand, 12416613 - 12416569
Alignment:
Q  175 aaatgatatttgaacaactatttttgaacaacttttctgacaact 219  Q
    |||||||||||||||||| |||||| ||||| |||| ||||||||    
T  12416613 aaatgatatttgaacaaccatttttaaacaaattttgtgacaact 12416569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 170 - 210
Target Start/End: Complemental strand, 18550164 - 18550124
Alignment:
Q  170 gagagaaatgatatttgaacaactatttttgaacaactttt 210  Q
    ||||| ||||||||||||||||||||||| | |||||||||    
T  18550164 gagagtaatgatatttgaacaactattttggtacaactttt 18550124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 171 - 219
Target Start/End: Complemental strand, 33107939 - 33107891
Alignment:
Q  171 agagaaatgatatttgaacaactatttttgaacaacttttctgacaact 219  Q
    |||||||||||||||||||||| | ||||  ||||||||| ||||||||    
T  33107939 agagaaatgatatttgaacaaccactttttgacaacttttatgacaact 33107891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 171 - 219
Target Start/End: Original strand, 35067159 - 35067207
Alignment:
Q  171 agagaaatgatatttgaacaactatttttgaacaacttttctgacaact 219  Q
    |||||||||||||||| ||||| |||| | |||||||||| ||||||||    
T  35067159 agagaaatgatatttgtacaaccatttcttaacaacttttgtgacaact 35067207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 171 - 219
Target Start/End: Original strand, 36023083 - 36023131
Alignment:
Q  171 agagaaatgatatttgaacaactatttttgaacaacttttctgacaact 219  Q
    ||||||||||||||||||||| ||||||| ||||| |||  ||||||||    
T  36023083 agagaaatgatatttgaacaattattttttaacaattttggtgacaact 36023131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 173 - 209
Target Start/End: Original strand, 37172072 - 37172108
Alignment:
Q  173 agaaatgatatttgaacaactatttttgaacaacttt 209  Q
    |||||| |||||||||||||||||||| |||||||||    
T  37172072 agaaatcatatttgaacaactattttttaacaacttt 37172108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 171 - 219
Target Start/End: Original strand, 41955928 - 41955976
Alignment:
Q  171 agagaaatgatatttgaacaactatttttgaacaacttttctgacaact 219  Q
    |||||||||||||||| | ||| |||||| |||||||||| ||||||||    
T  41955928 agagaaatgatatttgtataaccattttttaacaacttttatgacaact 41955976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 36; Significance: 0.00000000002; HSPs: 24)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 160 - 199
Target Start/End: Original strand, 46212958 - 46212997
Alignment:
Q  160 tatatatagggagagaaatgatatttgaacaactattttt 199  Q
    |||||||||| |||||||||||||||||||||||||||||    
T  46212958 tatatataggaagagaaatgatatttgaacaactattttt 46212997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 171 - 219
Target Start/End: Original strand, 20760254 - 20760302
Alignment:
Q  171 agagaaatgatatttgaacaactatttttgaacaacttttctgacaact 219  Q
    |||||||||||||||| |||| ||||||| |||||||||| ||||||||    
T  20760254 agagaaatgatatttgtacaattattttttaacaacttttgtgacaact 20760302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 171 - 219
Target Start/End: Original strand, 20766645 - 20766693
Alignment:
Q  171 agagaaatgatatttgaacaactatttttgaacaacttttctgacaact 219  Q
    |||||||||||||||| |||| ||||||| |||||||||| ||||||||    
T  20766645 agagaaatgatatttgtacaattattttttaacaacttttgtgacaact 20766693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 171 - 219
Target Start/End: Original strand, 42815403 - 42815451
Alignment:
Q  171 agagaaatgatatttgaacaactatttttgaacaacttttctgacaact 219  Q
    |||||||||||||||| |||||||||||  |||||||||| ||||||||    
T  42815403 agagaaatgatatttgtacaactattttgtaacaacttttgtgacaact 42815451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 171 - 219
Target Start/End: Complemental strand, 50890145 - 50890098
Alignment:
Q  171 agagaaatgatatttgaacaactatttttgaacaacttttctgacaact 219  Q
    |||||||||||||||| ||||||||||||| ||||||||| ||||||||    
T  50890145 agagaaatgatatttgtacaactatttttg-acaacttttgtgacaact 50890098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 171 - 219
Target Start/End: Original strand, 51255745 - 51255793
Alignment:
Q  171 agagaaatgatatttgaacaactatttttgaacaacttttctgacaact 219  Q
    |||||||||||||||||||||| ||||||  ||||||||| ||||||||    
T  51255745 agagaaatgatatttgaacaaccattttttgacaacttttgtgacaact 51255793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 171 - 219
Target Start/End: Complemental strand, 51734705 - 51734657
Alignment:
Q  171 agagaaatgatatttgaacaactatttttgaacaacttttctgacaact 219  Q
    |||||||||||||||||||||| | |||| |||||||||| ||||||||    
T  51734705 agagaaatgatatttgaacaaccacttttaaacaacttttgtgacaact 51734657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 171 - 210
Target Start/End: Complemental strand, 2004261 - 2004222
Alignment:
Q  171 agagaaatgatatttgaacaactatttttgaacaactttt 210  Q
    |||||||||||||||||||||| |||||| ||||||||||    
T  2004261 agagaaatgatatttgaacaaccattttttaacaactttt 2004222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 171 - 210
Target Start/End: Complemental strand, 7146192 - 7146153
Alignment:
Q  171 agagaaatgatatttgaacaactatttttgaacaactttt 210  Q
    |||||||||||||||||||||| |||||| ||||||||||    
T  7146192 agagaaatgatatttgaacaaccatttttaaacaactttt 7146153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 172 - 219
Target Start/End: Complemental strand, 10250586 - 10250540
Alignment:
Q  172 gagaaatgatatttgaacaactatttttgaacaacttttctgacaact 219  Q
    ||||||||||||||||||||||||||||  ||||||||| ||||||||    
T  10250586 gagaaatgatatttgaacaactattttt-tacaacttttgtgacaact 10250540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 171 - 209
Target Start/End: Complemental strand, 31413847 - 31413809
Alignment:
Q  171 agagaaatgatatttgaacaactatttttgaacaacttt 209  Q
    |||||||||||||||| ||||||||||||| ||||||||    
T  31413847 agagaaatgatatttgtacaactatttttgtacaacttt 31413809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 172 - 210
Target Start/End: Complemental strand, 43511718 - 43511680
Alignment:
Q  172 gagaaatgatatttgaacaactatttttgaacaactttt 210  Q
    ||||||||||||||| ||||||||||||| |||||||||    
T  43511718 gagaaatgatatttgtacaactatttttgtacaactttt 43511680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 172 - 209
Target Start/End: Original strand, 4974111 - 4974148
Alignment:
Q  172 gagaaatgatatttgaacaactatttttgaacaacttt 209  Q
    ||||||||||||||| |||||||||||| |||||||||    
T  4974111 gagaaatgatatttgtacaactattttttaacaacttt 4974148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 172 - 209
Target Start/End: Complemental strand, 36871228 - 36871191
Alignment:
Q  172 gagaaatgatatttgaacaactatttttgaacaacttt 209  Q
    ||||||||||||||| ||||||||||||| ||||||||    
T  36871228 gagaaatgatatttgtacaactatttttgtacaacttt 36871191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 171 - 219
Target Start/End: Original strand, 54128051 - 54128100
Alignment:
Q  171 agagaaatgatatttg-aacaactatttttgaacaacttttctgacaact 219  Q
    |||||||||||||||| |||||| |||||| |||||||||| ||||||||    
T  54128051 agagaaatgatatttgaaacaaccatttttaaacaacttttgtgacaact 54128100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 171 - 219
Target Start/End: Original strand, 4914905 - 4914953
Alignment:
Q  171 agagaaatgatatttgaacaactatttttgaacaacttttctgacaact 219  Q
    ||||||||||||||||||||||||||||   |||| |||| ||||||||    
T  4914905 agagaaatgatatttgaacaactattttgtgacaatttttatgacaact 4914953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 172 - 212
Target Start/End: Complemental strand, 4949305 - 4949265
Alignment:
Q  172 gagaaatgatatttgaacaactatttttgaacaacttttct 212  Q
    ||||||||||||||| ||||||||||| | |||||||||||    
T  4949305 gagaaatgatatttgtacaactattttggtacaacttttct 4949265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 171 - 219
Target Start/End: Original strand, 12241057 - 12241104
Alignment:
Q  171 agagaaatgatatttgaacaactatttttgaacaacttttctgacaact 219  Q
    |||||||||||||||| |||||||||||  |||||||||| ||||||||    
T  12241057 agagaaatgatatttgtacaactattttctaacaactttt-tgacaact 12241104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 171 - 219
Target Start/End: Complemental strand, 23369404 - 23369357
Alignment:
Q  171 agagaaatgatatttgaacaactatttttgaacaacttttctgacaact 219  Q
    |||||||||||||||||||||| ||||||  ||||||||| ||||||||    
T  23369404 agagaaatgatatttgaacaaccattttt-tacaacttttgtgacaact 23369357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 171 - 199
Target Start/End: Original strand, 27964986 - 27965014
Alignment:
Q  171 agagaaatgatatttgaacaactattttt 199  Q
    |||||||||||||||||||||||||||||    
T  27964986 agagaaatgatatttgaacaactattttt 27965014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 171 - 219
Target Start/End: Complemental strand, 33820408 - 33820361
Alignment:
Q  171 agagaaatgatatttgaacaactatttttgaacaacttttctgacaact 219  Q
    |||||||||||||||| |||||||||||  |||||||||| ||||||||    
T  33820408 agagaaatgatatttgtacaactattttctaacaactttt-tgacaact 33820361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 171 - 199
Target Start/End: Original strand, 39195054 - 39195082
Alignment:
Q  171 agagaaatgatatttgaacaactattttt 199  Q
    |||||||||||||||||||||||||||||    
T  39195054 agagaaatgatatttgaacaactattttt 39195082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 171 - 219
Target Start/End: Original strand, 39478434 - 39478481
Alignment:
Q  171 agagaaatgatatttgaacaactatttttgaacaacttttctgacaact 219  Q
    ||||||||||||| |||||||||||||||  ||||||||| ||||||||    
T  39478434 agagaaatgatatatgaacaactattttt-tacaacttttgtgacaact 39478481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 171 - 219
Target Start/End: Original strand, 54909322 - 54909370
Alignment:
Q  171 agagaaatgatatttgaacaactatttttgaacaacttttctgacaact 219  Q
    |||||||||||||||||||||| ||| || ||||| |||| ||||||||    
T  54909322 agagaaatgatatttgaacaaccattattaaacaatttttgtgacaact 54909370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 35; Significance: 0.00000000008; HSPs: 17)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 171 - 217
Target Start/End: Complemental strand, 32872970 - 32872924
Alignment:
Q  171 agagaaatgatatttgaacaactatttttgaacaacttttctgacaa 217  Q
    |||||||||||||||||||||||||||||  ||||||||| ||||||    
T  32872970 agagaaatgatatttgaacaactattttttgacaacttttgtgacaa 32872924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 171 - 219
Target Start/End: Original strand, 1274357 - 1274404
Alignment:
Q  171 agagaaatgatatttgaacaactatttttgaacaacttttctgacaact 219  Q
    |||||||||||||||||||||| ||||||| ||||||||| ||||||||    
T  1274357 agagaaatgatatttgaacaaccatttttg-acaacttttgtgacaact 1274404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 171 - 219
Target Start/End: Complemental strand, 1293158 - 1293110
Alignment:
Q  171 agagaaatgatatttgaacaactatttttgaacaacttttctgacaact 219  Q
    |||||||||||||||| ||||| |||||| |||||||||| ||||||||    
T  1293158 agagaaatgatatttgtacaaccattttttaacaacttttgtgacaact 1293110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 171 - 219
Target Start/End: Complemental strand, 13089854 - 13089806
Alignment:
Q  171 agagaaatgatatttgaacaactatttttgaacaacttttctgacaact 219  Q
    |||||||||||||||||||||| ||||||  ||||||||| ||||||||    
T  13089854 agagaaatgatatttgaacaaccattttttgacaacttttgtgacaact 13089806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 171 - 219
Target Start/End: Complemental strand, 24468358 - 24468310
Alignment:
Q  171 agagaaatgatatttgaacaactatttttgaacaacttttctgacaact 219  Q
    |||||||||||||||||||||| |||||| |||||||||| ||| ||||    
T  24468358 agagaaatgatatttgaacaaccatttttaaacaacttttgtgataact 24468310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 172 - 219
Target Start/End: Complemental strand, 16594447 - 16594400
Alignment:
Q  172 gagaaatgatatttgaacaactatttttgaacaacttttctgacaact 219  Q
    ||||||||||||||||||| | |||||| |||||||||| ||||||||    
T  16594447 gagaaatgatatttgaacatccattttttaacaacttttgtgacaact 16594400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 172 - 219
Target Start/End: Original strand, 31748336 - 31748383
Alignment:
Q  172 gagaaatgatatttgaacaactatttttgaacaacttttctgacaact 219  Q
    ||||||||||||||| ||||||||||||  ||||||||| ||||||||    
T  31748336 gagaaatgatatttgtacaactatttttttacaacttttgtgacaact 31748383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 171 - 210
Target Start/End: Complemental strand, 42446363 - 42446324
Alignment:
Q  171 agagaaatgatatttgaacaactatttttgaacaactttt 210  Q
    |||||||||||||||||||||||||||||  |||||||||    
T  42446363 agagaaatgatatttgaacaactattttttgacaactttt 42446324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 171 - 217
Target Start/End: Original strand, 18660758 - 18660803
Alignment:
Q  171 agagaaatgatatttgaacaactatttttgaacaacttttctgacaa 217  Q
    |||||||||||||||||||||| ||||||| ||||||||| ||||||    
T  18660758 agagaaatgatatttgaacaaccatttttg-acaacttttgtgacaa 18660803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 171 - 209
Target Start/End: Original strand, 38919862 - 38919900
Alignment:
Q  171 agagaaatgatatttgaacaactatttttgaacaacttt 209  Q
    |||||||||||||||| ||||||||||||| ||||||||    
T  38919862 agagaaatgatatttgtacaactatttttgtacaacttt 38919900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 171 - 217
Target Start/End: Complemental strand, 43214131 - 43214085
Alignment:
Q  171 agagaaatgatatttgaacaactatttttgaacaacttttctgacaa 217  Q
    |||||||||||||||||||| |||||||  |||||||||| ||||||    
T  43214131 agagaaatgatatttgaacatctattttgcaacaacttttgtgacaa 43214085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 171 - 219
Target Start/End: Original strand, 611863 - 611911
Alignment:
Q  171 agagaaatgatatttgaacaactatttttgaacaacttttctgacaact 219  Q
    ||||||||||||||||||||| || ||||  ||||||||| ||||||||    
T  611863 agagaaatgatatttgaacaattactttttgacaacttttgtgacaact 611911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 171 - 219
Target Start/End: Original strand, 14011316 - 14011364
Alignment:
Q  171 agagaaatgatatttgaacaactatttttgaacaacttttctgacaact 219  Q
    |||||||||||||||||||||  |||||  |||||||||| ||||||||    
T  14011316 agagaaatgatatttgaacaatcattttgtaacaacttttgtgacaact 14011364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 171 - 219
Target Start/End: Original strand, 18695317 - 18695365
Alignment:
Q  171 agagaaatgatatttgaacaactatttttgaacaacttttctgacaact 219  Q
    |||||||||||||||| ||||| |||||  |||||||||| ||||||||    
T  18695317 agagaaatgatatttgtacaaccattttgtaacaacttttgtgacaact 18695365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 172 - 216
Target Start/End: Original strand, 21155987 - 21156031
Alignment:
Q  172 gagaaatgatatttgaacaactatttttgaacaacttttctgaca 216  Q
    ||||||||||||||||||||| ||||||  ||||||||| |||||    
T  21155987 gagaaatgatatttgaacaaccattttttgacaacttttgtgaca 21156031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 171 - 219
Target Start/End: Original strand, 33037519 - 33037566
Alignment:
Q  171 agagaaatgatatttgaacaactatttttgaacaacttttctgacaact 219  Q
    |||||||||||||||||||||| ||||||  ||||||||| ||||||||    
T  33037519 agagaaatgatatttgaacaaccattttt-tacaacttttatgacaact 33037566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 172 - 208
Target Start/End: Original strand, 35301483 - 35301519
Alignment:
Q  172 gagaaatgatatttgaacaactatttttgaacaactt 208  Q
    |||||||| |||||||||||| |||||||||||||||    
T  35301483 gagaaatgttatttgaacaaccatttttgaacaactt 35301519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0432 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0432
Description:

Target: scaffold0432; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 171 - 219
Target Start/End: Complemental strand, 6592 - 6544
Alignment:
Q  171 agagaaatgatatttgaacaactatttttgaacaacttttctgacaact 219  Q
    |||||||||||||||||||||  |||||| |||||||||| ||||||||    
T  6592 agagaaatgatatttgaacaatcattttttaacaacttttgtgacaact 6544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 33; Significance: 0.000000001; HSPs: 25)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 171 - 219
Target Start/End: Complemental strand, 9567033 - 9566985
Alignment:
Q  171 agagaaatgatatttgaacaactatttttgaacaacttttctgacaact 219  Q
    |||||||||||||||||||||| ||||||  ||||||||| ||||||||    
T  9567033 agagaaatgatatttgaacaaccattttttgacaacttttgtgacaact 9566985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 174 - 218
Target Start/End: Original strand, 33466066 - 33466110
Alignment:
Q  174 gaaatgatatttgaacaactatttttgaacaacttttctgacaac 218  Q
    |||||||||||||||||||||||||| |||||||| | |||||||    
T  33466066 gaaatgatatttgaacaactatttttaaacaacttatgtgacaac 33466110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 171 - 219
Target Start/End: Complemental strand, 48983740 - 48983692
Alignment:
Q  171 agagaaatgatatttgaacaactatttttgaacaacttttctgacaact 219  Q
    |||||||||||||||||||||| ||||||  ||||||||| ||||||||    
T  48983740 agagaaatgatatttgaacaaccattttttgacaacttttgtgacaact 48983692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 172 - 219
Target Start/End: Original strand, 649768 - 649815
Alignment:
Q  172 gagaaatgatatttgaacaactatttttgaacaacttttctgacaact 219  Q
    ||||||||||||||||||||| ||||||  ||||||||| ||||||||    
T  649768 gagaaatgatatttgaacaaccatttttttacaacttttgtgacaact 649815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 172 - 219
Target Start/End: Complemental strand, 19947812 - 19947765
Alignment:
Q  172 gagaaatgatatttgaacaactatttttgaacaacttttctgacaact 219  Q
    ||||||||||||||||||||| ||||||  ||||||||| ||||||||    
T  19947812 gagaaatgatatttgaacaaccattttttgacaacttttgtgacaact 19947765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 171 - 217
Target Start/End: Complemental strand, 15083122 - 15083077
Alignment:
Q  171 agagaaatgatatttgaacaactatttttgaacaacttttctgacaa 217  Q
    |||||||||||||||||||||| ||||||| ||||||||| ||||||    
T  15083122 agagaaatgatatttgaacaaccatttttg-acaacttttgtgacaa 15083077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 172 - 217
Target Start/End: Complemental strand, 49020475 - 49020430
Alignment:
Q  172 gagaaatgatatttgaacaactatttttgaacaacttttctgacaa 217  Q
    ||||||||||||||| ||||| |||||| |||||||||| ||||||    
T  49020475 gagaaatgatatttgtacaaccattttttaacaacttttgtgacaa 49020430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 171 - 219
Target Start/End: Original strand, 1689390 - 1689438
Alignment:
Q  171 agagaaatgatatttgaacaactatttttgaacaacttttctgacaact 219  Q
    |||||||||||||||| |||||||||||  ||||| |||| ||||||||    
T  1689390 agagaaatgatatttgtacaactattttataacaatttttgtgacaact 1689438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 171 - 219
Target Start/End: Original strand, 2571634 - 2571681
Alignment:
Q  171 agagaaatgatatttgaacaactatttttgaacaacttttctgacaact 219  Q
    |||||||||||||||||||||| ||||||  ||||||||| ||||||||    
T  2571634 agagaaatgatatttgaacaaccattttt-tacaacttttgtgacaact 2571681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 171 - 219
Target Start/End: Original strand, 4213071 - 4213119
Alignment:
Q  171 agagaaatgatatttgaacaactatttttgaacaacttttctgacaact 219  Q
    |||||||||||||||||||||| ||||||  | ||||||| ||||||||    
T  4213071 agagaaatgatatttgaacaaccattttttgataacttttgtgacaact 4213119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 171 - 219
Target Start/End: Complemental strand, 8350268 - 8350221
Alignment:
Q  171 agagaaatgatatttgaacaactatttttgaacaacttttctgacaact 219  Q
    |||||||||||||||||||||| ||||||  ||||||||| ||||||||    
T  8350268 agagaaatgatatttgaacaaccattttt-tacaacttttgtgacaact 8350221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 171 - 219
Target Start/End: Original strand, 8905727 - 8905774
Alignment:
Q  171 agagaaatgatatttgaacaactatttttgaacaacttttctgacaact 219  Q
    |||||||||||||||| |||||||||||| |||||| ||| ||||||||    
T  8905727 agagaaatgatatttgtacaactattttttaacaaccttt-tgacaact 8905774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 171 - 219
Target Start/End: Original strand, 9987950 - 9987998
Alignment:
Q  171 agagaaatgatatttgaacaactatttttgaacaacttttctgacaact 219  Q
    |||||||||||||||||||||| | ||||  ||||||||| ||||||||    
T  9987950 agagaaatgatatttgaacaaccaatttttgacaacttttgtgacaact 9987998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 171 - 219
Target Start/End: Complemental strand, 17082815 - 17082767
Alignment:
Q  171 agagaaatgatatttgaacaactatttttgaacaacttttctgacaact 219  Q
    |||||||| ||||||||||||||| ||||  ||||||||| ||||||||    
T  17082815 agagaaataatatttgaacaactactttttgacaacttttgtgacaact 17082767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 171 - 219
Target Start/End: Complemental strand, 21433473 - 21433425
Alignment:
Q  171 agagaaatgatatttgaacaactatttttgaacaacttttctgacaact 219  Q
    |||||||||||||||| ||||| |||||  |||||||||| ||||||||    
T  21433473 agagaaatgatatttgtacaaccattttgtaacaacttttgtgacaact 21433425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 171 - 219
Target Start/End: Original strand, 27742616 - 27742664
Alignment:
Q  171 agagaaatgatatttgaacaactatttttgaacaacttttctgacaact 219  Q
    |||||||||||||||||||||| | ||||  ||||||||| ||||||||    
T  27742616 agagaaatgatatttgaacaaccactttttgacaacttttgtgacaact 27742664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 171 - 219
Target Start/End: Complemental strand, 32915144 - 32915096
Alignment:
Q  171 agagaaatgatatttgaacaactatttttgaacaacttttctgacaact 219  Q
    |||||||||||||||||||| |||||||   ||||||||| ||||||||    
T  32915144 agagaaatgatatttgaacatctattttatgacaacttttgtgacaact 32915096  T

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Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 171 - 219
Target Start/End: Original strand, 33100807 - 33100854
Alignment:
Q  171 agagaaatgatatttgaacaactatttttgaacaacttttctgacaact 219  Q
    |||||||||||||||||||||| ||||||  ||||||||| ||||||||    
T  33100807 agagaaatgatatttgaacaaccattttt-tacaacttttttgacaact 33100854  T

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Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 171 - 219
Target Start/End: Original strand, 34008179 - 34008227
Alignment:
Q  171 agagaaatgatatttgaacaactatttttgaacaacttttctgacaact 219  Q
    |||||||||||||||||||| |||||||   ||||||||| ||||||||    
T  34008179 agagaaatgatatttgaacatctattttatgacaacttttgtgacaact 34008227  T

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Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 171 - 219
Target Start/End: Original strand, 42824453 - 42824501
Alignment:
Q  171 agagaaatgatatttgaacaactatttttgaacaacttttctgacaact 219  Q
    ||||||||||||||||| |||| |||||| ||| |||||| ||||||||    
T  42824453 agagaaatgatatttgatcaaccatttttaaactacttttgtgacaact 42824501  T

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Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 171 - 219
Target Start/End: Complemental strand, 44519223 - 44519176
Alignment:
Q  171 agagaaatgatatttgaacaactatttttgaacaacttttctgacaact 219  Q
    ||||||||||||| |||||||| ||||||| ||||||||| ||||||||    
T  44519223 agagaaatgatatatgaacaaccatttttg-acaacttttatgacaact 44519176  T

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Target: chr1; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 171 - 219
Target Start/End: Original strand, 47214207 - 47214255
Alignment:
Q  171 agagaaatgatatttgaacaactatttttgaacaacttttctgacaact 219  Q
    |||||||||||||||||||| |||||||   ||||||||| ||||||||    
T  47214207 agagaaatgatatttgaacatctattttatgacaacttttgtgacaact 47214255  T

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Target: chr1; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 171 - 219
Target Start/End: Original strand, 48858822 - 48858870
Alignment:
Q  171 agagaaatgatatttgaacaactatttttgaacaacttttctgacaact 219  Q
    |||||||||||||||||||||| | ||||  ||||||||| ||||||||    
T  48858822 agagaaatgatatttgaacaaccactttttgacaacttttgtgacaact 48858870  T

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Target: chr1; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 171 - 199
Target Start/End: Complemental strand, 49065436 - 49065408
Alignment:
Q  171 agagaaatgatatttgaacaactattttt 199  Q
    |||||||||||||||||||||||||||||    
T  49065436 agagaaatgatatttgaacaactattttt 49065408  T

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Target: chr1; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 171 - 199
Target Start/End: Complemental strand, 49647222 - 49647194
Alignment:
Q  171 agagaaatgatatttgaacaactattttt 199  Q
    |||||||||||||||||||||||||||||    
T  49647222 agagaaatgatatttgaacaactattttt 49647194  T

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Target: scaffold0299 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0299
Description:

Target: scaffold0299; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 172 - 210
Target Start/End: Complemental strand, 18869 - 18831
Alignment:
Q  172 gagaaatgatatttgaacaactatttttgaacaactttt 210  Q
    |||| |||||||||||||||||||||| |||||||||||    
T  18869 gagatatgatatttgaacaactattttggaacaactttt 18831  T

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Target: scaffold0150 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0150
Description:

Target: scaffold0150; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 172 - 210
Target Start/End: Original strand, 30536 - 30574
Alignment:
Q  172 gagaaatgatatttgaacaactatttttgaacaactttt 210  Q
    |||| |||||||||||||||||||||| |||||||||||    
T  30536 gagatatgatatttgaacaactattttggaacaactttt 30574  T

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Target: scaffold0056 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: scaffold0056
Description:

Target: scaffold0056; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 170 - 199
Target Start/End: Complemental strand, 76692 - 76663
Alignment:
Q  170 gagagaaatgatatttgaacaactattttt 199  Q
    ||||||||||||||||||||||||||||||    
T  76692 gagagaaatgatatttgaacaactattttt 76663  T

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Target: scaffold0018 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 92 - 133
Target Start/End: Original strand, 171884 - 171925
Alignment:
Q  92 taaagcaattcctatgaattgtcgaaatattcatatataaat 133  Q
    |||| |||||||||||||||||| ||||||||||||| ||||    
T  171884 taaaacaattcctatgaattgtcaaaatattcatataaaaat 171925  T

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Target: scaffold0504 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0504
Description:

Target: scaffold0504; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 173 - 209
Target Start/End: Original strand, 11159 - 11195
Alignment:
Q  173 agaaatgatatttgaacaactatttttgaacaacttt 209  Q
    |||||||||||||| ||||| ||||||||||||||||    
T  11159 agaaatgatatttgtacaaccatttttgaacaacttt 11195  T

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Target: scaffold0034 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0034
Description:

Target: scaffold0034; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 171 - 219
Target Start/End: Complemental strand, 101978 - 101930
Alignment:
Q  171 agagaaatgatatttgaacaactatttttgaacaacttttctgacaact 219  Q
    ||||||||||||| |||||||| ||||||  ||||||||| ||||||||    
T  101978 agagaaatgatatctgaacaaccattttttgacaacttttgtgacaact 101930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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