View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11557A_low_425 (Length: 218)
Name: NF11557A_low_425
Description: NF11557A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11557A_low_425 |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 151; Significance: 5e-80; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 151; E-Value: 5e-80
Query Start/End: Original strand, 36 - 218
Target Start/End: Original strand, 33262054 - 33262236
Alignment:
| Q |
36 |
ttgcaaccacagagtgccatgttggaagggccagcaattagtcatctgcaaccacaaactgccatattggaggggtcaacaatgactagtttgcaaccgc |
135 |
Q |
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| T |
33262054 |
ttgctaccacagactgccatgttggaagggccatcaattagtaatctgcaaccacgaactgccatattggaggggtcaacaatgactagtttgcaaccgc |
33262153 |
T |
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| Q |
136 |
agaatgccacattgcaagggccagcaagtctgcctttcaacatcccaacttcagaagagctgagctcaatgattttgggtcat |
218 |
Q |
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| T |
33262154 |
agaatgccacactgcaagggccaacaagtctgcctttcaacatcccaatttcagaagagctgagctcaatgattttgggtcat |
33262236 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 33261974 - 33262025
Alignment:
| Q |
1 |
agagagcgatattgcaagggccagcgatgactgagttgcaaccacagagtgc |
52 |
Q |
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| T |
33261974 |
agagagcgatattgcaagggccagcgatgactgagttggaaccacagagtgc |
33262025 |
T |
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