View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11557A_low_427 (Length: 217)
Name: NF11557A_low_427
Description: NF11557A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11557A_low_427 |
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Alignment Details
Target: chr5 (Bit Score: 137; Significance: 1e-71; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 19 - 196
Target Start/End: Complemental strand, 31998088 - 31997911
Alignment:
| Q |
19 |
aaataggtcaaaagactttgattnnnnnnnttaaaatccaattcttatgcagagccagaaagataaacaaaccaactgttaccatgaaatttagcagcta |
118 |
Q |
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| T |
31998088 |
aaataggtcaaaagacttcgattaaaaaaattaaaatccaattcttatgcagagccagaaagataaacaaaccaactgtgaccaagaaatttagcagcta |
31997989 |
T |
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| Q |
119 |
gtatacttccttccagaggcacatttttccctccagaaagaccacctcctattatgcaagtccacatccacgaggcat |
196 |
Q |
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| T |
31997988 |
atatacttccttccagaggcacatttttccctccagaaagaccacctcctattatgcaagtccacgtccacgaggcat |
31997911 |
T |
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Target: chr8 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 122 - 193
Target Start/End: Complemental strand, 15843109 - 15843038
Alignment:
| Q |
122 |
tacttccttccagaggcacatttttccctccagaaagaccacctcctattatgcaagtccacatccacgagg |
193 |
Q |
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||||||| |||||||||||||| ||||||| ||||||| |||||| ||||||||||||||||||||||| |
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| T |
15843109 |
tacttccctccagaggcacattgccccctccaacaagaccatctcctactatgcaagtccacatccacgagg |
15843038 |
T |
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