View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11557A_low_428 (Length: 216)
Name: NF11557A_low_428
Description: NF11557A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11557A_low_428 |
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| [»] chr4 (1 HSPs) |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 150; Significance: 2e-79; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 23 - 216
Target Start/End: Original strand, 53593456 - 53593649
Alignment:
| Q |
23 |
atcaatctattaattaagatataactgaaaaaatcctaaaattcattccaaatcaagttcatcaaatttggaaaagaaagattgtgaaggcaaatggaag |
122 |
Q |
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| T |
53593456 |
atcaacctactaattaagatataactgaaagaatcctaaaattcattccaaatcaagttcatcaaatttgaaaaagaaagattgtgaaggaaaaaggaag |
53593555 |
T |
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| Q |
123 |
aattgacggcggcctatagcataaccgtagtcgacggtggagaggaagacgacggcggaggcaaagaaaagttgatggtgggtggggggttcag |
216 |
Q |
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| T |
53593556 |
aattgacggcggcctatggcataaccgtggtcgacggtggagaggaagacaacggcagaggcaaagaaaagttgatggtgggtggtgggttcag |
53593649 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 131; Significance: 4e-68; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 23 - 205
Target Start/End: Complemental strand, 16041411 - 16041229
Alignment:
| Q |
23 |
atcaatctattaattaagatataactgaaaaaatcctaaaattcattccaaatcaagttcatcaaatttggaaaagaaagattgtgaaggcaaatggaag |
122 |
Q |
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| T |
16041411 |
atcaacctactaattaagatataactgaaagaatcctaaaattcattccaaatcaagttcatcaaatttgaaaaggaaagattgtgaaggaaaaaggaag |
16041312 |
T |
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| Q |
123 |
aattgacggcggcctatagcataaccgtagtcgacggtggagaggaagacgacggcggaggcaaagaaaagttgatggtgggt |
205 |
Q |
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| T |
16041311 |
aattgacggcggcctatggcataaccgtgatcgacggtggagaggaagacaacgacagaggcaaagaaaagttgatggtgggt |
16041229 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 99 - 216
Target Start/End: Original strand, 7757900 - 7758024
Alignment:
| Q |
99 |
aaagattgtgaaggcaaatggaagaattgacggcggcctatagcataaccgtagtcgacggtggag---aggaagacgacggcg----gaggcaaagaaa |
191 |
Q |
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| T |
7757900 |
aaagattgtgaaggcaagaggaagatttgacgacagcctatggaataaccgtcgtcgacgttggagatcaggaggacggcggcggagagaggcagagaaa |
7757999 |
T |
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| Q |
192 |
agttgatggtgggtggggggttcag |
216 |
Q |
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| T |
7758000 |
agttgatgatgggtggtgggttcag |
7758024 |
T |
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