View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11557A_low_432 (Length: 216)
Name: NF11557A_low_432
Description: NF11557A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11557A_low_432 |
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Alignment Details
Target: chr2 (Bit Score: 172; Significance: 1e-92; HSPs: 7)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 172; E-Value: 1e-92
Query Start/End: Original strand, 20 - 199
Target Start/End: Original strand, 2326086 - 2326265
Alignment:
| Q |
20 |
catccccatcatcataagcatacaatggctccgaaaatcattttcccaacttgaaccttttctcaaaactctccatgccaaacatggtcctatcatcaat |
119 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2326086 |
catccccatcatcacaagcatacaatggctccgaaaatcattttcccaacttgaaccttttctcaaaactctccatgccaaacatggtcctatcatcaat |
2326185 |
T |
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| Q |
120 |
cttaatatcggctccagaccttccatttacatctccgaccgtgctctggcccaccacgctctcgttcaaaattcatctct |
199 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
2326186 |
cttaatatcggctccagaccttccatttacatctccgaccgtgctctggcccaccacgccctcgttcaaaattcatctct |
2326265 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 112; E-Value: 8e-57
Query Start/End: Original strand, 27 - 190
Target Start/End: Original strand, 2329808 - 2329971
Alignment:
| Q |
27 |
atcatcataagcatacaatggctccgaaaatcattttcccaacttgaaccttttctcaaaactctccatgccaaacatggtcctatcatcaatcttaata |
126 |
Q |
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||||||| |||||| |||||||| ||||||||||| |||| |||||||||||||||| |||||| |||||||||||||||||||||||||||||||||| |
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| T |
2329808 |
atcatcacaagcatccaatggcttcgaaaatcattcgcccagcttgaaccttttctcagaactcttcatgccaaacatggtcctatcatcaatcttaata |
2329907 |
T |
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| Q |
127 |
tcggctccagaccttccatttacatctccgaccgtgctctggcccaccacgctctcgttcaaaa |
190 |
Q |
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|||| || |||||||||||| |||| ||||||||||||||||||||||||||||||||||||| |
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| T |
2329908 |
tcggttctcgaccttccattttcatcgccgaccgtgctctggcccaccacgctctcgttcaaaa |
2329971 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 20 - 190
Target Start/End: Original strand, 2320232 - 2320402
Alignment:
| Q |
20 |
catccccatcatcataagcatacaatggctccgaaaatcattttcccaacttgaaccttttctcaaaactctccatgccaaacatggtcctatcatcaat |
119 |
Q |
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| T |
2320232 |
catccccatcatcacaaacttccaattgctccaaaaatcaatctcccaacttgaaccttttctcaaaactctccatgccaaacatggtcctatcatcact |
2320331 |
T |
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| Q |
120 |
cttaatatcggctccagaccttccatttacatctccgaccgtgctctggcccaccacgctctcgttcaaaa |
190 |
Q |
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| ||||||| || |||||||||||| |||| ||||| ||||||||| ||||| | |||||||||||| |
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| T |
2320332 |
gtccatatcggttctcgaccttccattttcatcaacgaccatgctctggctcaccatgttctcgttcaaaa |
2320402 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 20 - 196
Target Start/End: Original strand, 2292912 - 2293088
Alignment:
| Q |
20 |
catccccatcatcataagcatacaatggctccgaaaatcattttcccaacttgaaccttttctcaaaactctccatgccaaacatggtcctatcatcaat |
119 |
Q |
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|||||||||||||| || | | |||| ||||| ||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
2292912 |
catccccatcatcacaaacttccaattgctccaaaaatcaatctcccaacttgaaccttttctcaaaactctccatgccaaacatggtcctatcatcact |
2293011 |
T |
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| Q |
120 |
cttaatatcggctccagaccttccatttacatctccgaccgtgctctggcccaccacgctctcgttcaaaattcatc |
196 |
Q |
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| T |
2293012 |
gtccatatcggttctcgaccttccattttcattaacgaccatactctggcccaccatgttctcgttcaaaactcatc |
2293088 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 20 - 190
Target Start/End: Original strand, 2302531 - 2302701
Alignment:
| Q |
20 |
catccccatcatcataagcatacaatggctccgaaaatcattttcccaacttgaaccttttctcaaaactctccatgccaaacatggtcctatcatcaat |
119 |
Q |
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|||||||||| ||| || ||| || | |||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
2302531 |
catccccatcctcacaaacattcagttgctccgaaaaccatcctcccaacttgaaccttttctcaaaactctccatgccaaacatggtcctatcatcact |
2302630 |
T |
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| Q |
120 |
cttaatatcggctccagaccttccatttacatctccgaccgtgctctggcccaccacgctctcgttcaaaa |
190 |
Q |
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|| | ||||| || |||||||||||| |||| |||| ||||||||||||||| | |||||||||||| |
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| T |
2302631 |
ctccacatcggttctcgaccttccattttcatcgatgaccatgctctggcccaccatgttctcgttcaaaa |
2302701 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 20 - 190
Target Start/End: Original strand, 2309243 - 2309413
Alignment:
| Q |
20 |
catccccatcatcataagcatacaatggctccgaaaatcattttcccaacttgaaccttttctcaaaactctccatgccaaacatggtcctatcatcaat |
119 |
Q |
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|
|||||||||||||| || | | |||| ||||| ||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
2309243 |
catccccatcatcacaaacttccaattgctccaaaaatcaatctcccaacttgaaccttttctcaaaactctccatgccaaacatggtcctatcatcatt |
2309342 |
T |
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| Q |
120 |
cttaatatcggctccagaccttccatttacatctccgaccgtgctctggcccaccacgctctcgttcaaaa |
190 |
Q |
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| ||||||| || ||||||||||| |||| ||||| ||||||||| ||||| | |||||||||||| |
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| T |
2309343 |
gtccatatcggttctcaaccttccattttcatcaacgaccatgctctggctcaccatgttctcgttcaaaa |
2309413 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 21 - 190
Target Start/End: Original strand, 2350102 - 2350271
Alignment:
| Q |
21 |
atccccatcatcataagcatacaatggctccgaaaatcattttcccaacttgaaccttttctcaaaactctccatgccaaacatggtcctatcatcaatc |
120 |
Q |
| |
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|||||||| |||| ||| || | ||||||||||||||||| |||||||| ||||||||| ||||||| ||||| ||||| ||||||||||||||| || |
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| T |
2350102 |
atccccattatcacaagtatcctatggctccgaaaatcatcgtcccaactcgaaccttttatcaaaaccctccacaccaaatatggtcctatcatcactc |
2350201 |
T |
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| Q |
121 |
ttaatatcggctccagaccttccatttacatctccgaccgtgctctggcccaccacgctctcgttcaaaa |
190 |
Q |
| |
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| || ||| | | | |||||||||||| ||||||||||| | |||| ||||||||||||||||||||||| |
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| T |
2350202 |
tcaaaatcagttaccgaccttccattttcatctccgaccatactctcgcccaccacgctctcgttcaaaa |
2350271 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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