View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11557A_low_434 (Length: 215)
Name: NF11557A_low_434
Description: NF11557A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11557A_low_434 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 153; Significance: 3e-81; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 10 - 215
Target Start/End: Original strand, 3790132 - 3790336
Alignment:
| Q |
10 |
aacaatatctctaaagttgaagggagcttcgcaatgccatgctagatgatcaccttcctcgcccttcccctcgtatgtgtctatgagtagtcatactcaa |
109 |
Q |
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| T |
3790132 |
aacaatagatctaaagttgaagggagcttcgcaatgccatgctagatgatcaccttcctcttccttcccctcttatgtgtctatgagtagtcatactcaa |
3790231 |
T |
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| Q |
110 |
caaattaattgaaaacaaattagaataatcataagcgagataagttttaattgagatgatgagtttannnnnnnncttgttgagaaatatgactatttgc |
209 |
Q |
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| T |
3790232 |
caaattaattgaaaacaaattagaataatcataagcgagataagttctaattgagatgatgagttta-ttttttccttgttgagaaatatgactatttgc |
3790330 |
T |
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| Q |
210 |
tcctat |
215 |
Q |
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|||||| |
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| T |
3790331 |
tcctat |
3790336 |
T |
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