View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11557A_low_435 (Length: 214)
Name: NF11557A_low_435
Description: NF11557A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11557A_low_435 |
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| [»] chr5 (5 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 192; Significance: 1e-104; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 23 - 214
Target Start/End: Complemental strand, 37704649 - 37704458
Alignment:
| Q |
23 |
taattacgttcaaaaagtctggtcttcgaagatattatttagtttaatgaacaccaaacttttctatgatggttactgaattaatattgttgccaaatgt |
122 |
Q |
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| T |
37704649 |
taattacgttcaaaaagtctggtcttcgaagatattatttagtttaatgaacaccaaacttttctatgatggttactgaattaatattgttgccaaatgt |
37704550 |
T |
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| Q |
123 |
catatcagtatatgtttatgaaaagcacccccaaaacaaaataagggaatacgtagactcaatttgcaaacaatctaataagtcaacctttt |
214 |
Q |
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| T |
37704549 |
catatcagtatatgtttatgaaaagcacccccaaaacaaaataagggaatacgtagactcaatttgcaaacaatctaataagtcaacctttt |
37704458 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 128; E-Value: 2e-66
Query Start/End: Original strand, 23 - 214
Target Start/End: Complemental strand, 37699171 - 37698977
Alignment:
| Q |
23 |
taattacgttcaaaaagtct-ggtcttcgaagatattatttagtttaatgaacaccaaacttttctatgatggttactgaattaatattgttgccaaatg |
121 |
Q |
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| T |
37699171 |
taattacgttcgaaaagtcttggttttccaagatgttatttagtttaatgaacaccaaacttttctatgattgttactgaattaatattgttgccaaatg |
37699072 |
T |
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| Q |
122 |
tcatatcagtatatgtttatgaaaagcacccccaaaacaaaataagggaatacgtagactcaa--tttgcaaacaatctaataagtcaacctttt |
214 |
Q |
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| T |
37699071 |
tcatatcagtatacggttatgaaaagcacccccaacacaaaataagggaatacctagactcaatgtttgtaaacaatctaataactcaaactttt |
37698977 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 23 - 207
Target Start/End: Complemental strand, 37437715 - 37437531
Alignment:
| Q |
23 |
taattacgttcaaaaagtct-ggtcttcgaagatattatttagtttaatgaacaccaaacttttctatgatggttactgaattaatattgttgccaaatg |
121 |
Q |
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| T |
37437715 |
taattacgttcgaaaagtcttggtcttccaatatgttatttagtttaatgaacaccaaacttttctatgattgttattgaattaatattgttgccaattg |
37437616 |
T |
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| Q |
122 |
tcatatcagtatatgtttatgaaaagcacccccaaaacaaaataagggaatacgtagactcaatttgcaaacaatctaataagtca |
207 |
Q |
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| T |
37437615 |
tcatatcactatacggttatgaaaagca-ccccacattaaaacaagggaatagctagactgaatttgtaaacaatctaataagtca |
37437531 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 157 - 214
Target Start/End: Complemental strand, 37698697 - 37698640
Alignment:
| Q |
157 |
aacaaaataagggaatacgtagactcaatttgcaaacaatctaataagtcaacctttt |
214 |
Q |
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| T |
37698697 |
aacaaaataagggaatacttagactcaatttgtaaacaatctaataagtcaaactttt |
37698640 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 22 - 97
Target Start/End: Complemental strand, 37698808 - 37698732
Alignment:
| Q |
22 |
ttaattacgttcaaaaagtct-ggtcttcgaagatattatttagtttaatgaacaccaaacttttctatgatggtta |
97 |
Q |
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| T |
37698808 |
ttaattacgttaaaaaagtcttggtcttccaagatgttatttagtttaacgaacaccaaacttttgtatgattgtta |
37698732 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 23 - 90
Target Start/End: Original strand, 16841041 - 16841109
Alignment:
| Q |
23 |
taattacgttcaaaaagtct-ggtcttcgaagatattatttagtttaatgaacaccaaacttttctatg |
90 |
Q |
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| T |
16841041 |
taattacgttcaaaaagtcttggtcttccaagattttatttagtttattaaacaccaaacttttgtatg |
16841109 |
T |
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