View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11557A_low_438 (Length: 214)
Name: NF11557A_low_438
Description: NF11557A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11557A_low_438 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 177; Significance: 1e-95; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 177; E-Value: 1e-95
Query Start/End: Original strand, 9 - 214
Target Start/End: Complemental strand, 14414519 - 14414314
Alignment:
| Q |
9 |
agacacaatagcattttcagttaacgaaggaatgttcctttccggattacctcgtacagctccccttggaggccgtagagatgcgctctattccctagca |
108 |
Q |
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| T |
14414519 |
agacacaatagcattttcagttaacgaaggaatgttcctttccggattacctcgtacagctccccttggaggccgtagagatgcgctctattccctagca |
14414420 |
T |
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| Q |
109 |
tctattgcggaagacgacaaccttccaatgcctaattggccgatggaaaaaatggttgacctctttacnnnnnnnggtttcacaattgaagaaatggtta |
208 |
Q |
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| T |
14414419 |
tctatcgcggaagacgacaaccttccaatgcctaattggccgatggaaaaaatggttgacctcttcacaaaaaaaggtttcacaattgaagaaatggtta |
14414320 |
T |
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| Q |
209 |
ttttac |
214 |
Q |
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| T |
14414319 |
ttttac |
14414314 |
T |
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