View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11557A_low_444 (Length: 212)

Name: NF11557A_low_444
Description: NF11557A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11557A_low_444
NF11557A_low_444
[»] chr3 (12 HSPs)
chr3 (17-193)||(29690933-29691109)
chr3 (100-187)||(30238215-30238301)
chr3 (111-187)||(9031707-9031783)
chr3 (24-102)||(9030645-9030723)
chr3 (100-150)||(49458770-49458820)
chr3 (100-145)||(21386134-21386179)
chr3 (127-191)||(2118176-2118240)
chr3 (103-166)||(53836318-53836380)
chr3 (103-145)||(4962359-4962401)
chr3 (100-150)||(33693670-33693720)
chr3 (100-144)||(7437194-7437238)
chr3 (24-96)||(30238127-30238199)
[»] chr8 (12 HSPs)
chr8 (100-187)||(33177515-33177602)
chr8 (24-187)||(4870705-4870879)
chr8 (24-78)||(33177425-33177479)
chr8 (103-181)||(19484558-19484635)
chr8 (100-150)||(27915201-27915251)
chr8 (100-150)||(27961620-27961670)
chr8 (100-150)||(42423609-42423659)
chr8 (100-145)||(44977140-44977185)
chr8 (102-150)||(27878259-27878307)
chr8 (102-150)||(28018440-28018488)
chr8 (100-146)||(8029498-8029544)
chr8 (100-150)||(12522051-12522101)
[»] chr4 (11 HSPs)
chr4 (17-193)||(40317211-40317411)
chr4 (17-193)||(40327285-40327485)
chr4 (100-183)||(25842629-25842712)
chr4 (101-161)||(26955671-26955731)
chr4 (100-150)||(32890280-32890330)
chr4 (100-144)||(46862591-46862635)
chr4 (103-166)||(29469523-29469585)
chr4 (72-150)||(35518124-35518205)
chr4 (100-150)||(24966138-24966188)
chr4 (100-150)||(29509708-29509758)
chr4 (100-150)||(50517519-50517569)
[»] chr1 (15 HSPs)
chr1 (24-187)||(226278-226458)
chr1 (24-148)||(46042295-46042431)
chr1 (24-182)||(42637701-42637872)
chr1 (103-182)||(5208933-5209011)
chr1 (103-182)||(1242960-1243038)
chr1 (103-181)||(41353786-41353863)
chr1 (102-150)||(48966153-48966201)
chr1 (100-144)||(49452705-49452749)
chr1 (103-182)||(8147706-8147784)
chr1 (103-166)||(11578779-11578841)
chr1 (100-143)||(32759747-32759790)
chr1 (100-150)||(28403626-28403676)
chr1 (100-150)||(49236643-49236693)
chr1 (100-145)||(3593646-3593691)
chr1 (110-158)||(2292900-2292948)
[»] chr2 (13 HSPs)
chr2 (24-187)||(37810449-37810626)
chr2 (100-185)||(24026164-24026249)
chr2 (100-163)||(32294246-32294309)
chr2 (100-161)||(30850777-30850838)
chr2 (102-182)||(2308394-2308474)
chr2 (103-182)||(18899582-18899660)
chr2 (112-187)||(28546146-28546220)
chr2 (100-150)||(31846813-31846863)
chr2 (120-176)||(32241928-32241984)
chr2 (100-150)||(9731349-9731399)
chr2 (100-150)||(34342648-34342698)
chr2 (102-144)||(38295371-38295413)
chr2 (100-145)||(18727288-18727333)
[»] chr7 (7 HSPs)
chr7 (100-183)||(1254165-1254248)
chr7 (24-180)||(6268821-6268989)
chr7 (100-150)||(23017388-23017438)
chr7 (103-182)||(14741795-14741873)
chr7 (103-181)||(4639553-4639630)
chr7 (100-150)||(43172470-43172520)
chr7 (100-150)||(21486540-21486591)
[»] chr6 (8 HSPs)
chr6 (32-187)||(21010481-21010647)
chr6 (24-161)||(15381145-15381286)
chr6 (100-150)||(16439105-16439155)
chr6 (100-150)||(33640919-33640969)
chr6 (100-145)||(28900477-28900522)
chr6 (139-187)||(12029266-12029314)
chr6 (100-150)||(2607312-2607362)
chr6 (100-145)||(24194881-24194926)
[»] chr5 (7 HSPs)
chr5 (24-160)||(36195939-36196084)
chr5 (24-136)||(31913806-31913930)
chr5 (100-161)||(15286140-15286201)
chr5 (24-102)||(16497471-16497548)
chr5 (103-182)||(28622847-28622925)
chr5 (101-150)||(29716548-29716597)
chr5 (103-182)||(5650452-5650530)
[»] scaffold0118 (1 HSPs)
scaffold0118 (100-160)||(38227-38287)
[»] scaffold0573 (1 HSPs)
scaffold0573 (100-145)||(9272-9317)


Alignment Details
Target: chr3 (Bit Score: 161; Significance: 5e-86; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 161; E-Value: 5e-86
Query Start/End: Original strand, 17 - 193
Target Start/End: Complemental strand, 29691109 - 29690933
Alignment:
Q  17 acttataatcaaaatacaaaattaatttgcaaaattagaagtttcataagactttaaaccatccgaaaaaccaagtttcaaaagttaataaacctatcca 116  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  29691109 acttataatcaaaatacaaaattaatttgcaaaatcagaagtttcataagactttaaaccatccgaaaaaccaaatttcaaaagttaataaacctatcca 29691010  T
Q  117 aaaaataaactagttaattttttcaaaagttcaatccttctaaagttccagaatatcattatcatcggtgttttctt 193  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  29691009 aaaaataaacaagttaattttttcaaaagttcaatccttctaaagttccacaatatcattatcatcggtgttttctt 29690933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 100 - 187
Target Start/End: Original strand, 30238215 - 30238301
Alignment:
Q  100 gttaataaacctatccaaaaaataaactagttaattttttcaaaagttcaatccttctaaagttccagaatatcattatcatcggtgt 187  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| || || ||||||| ||| |||||    
T  30238215 gttaataaacctatccaaaaaataaactagttaa-tttttcaaaagttcaatccttctaaagtttcataacatcattaacattggtgt 30238301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 111 - 187
Target Start/End: Original strand, 9031707 - 9031783
Alignment:
Q  111 tatccaaaaaataaactagttaattttttcaaaagttcaatccttctaaagttccagaatatcattatcatcggtgt 187  Q
    |||||||||||||||||||||||||| ||||||||||||||| |||||||||| |  |||||||||||||| |||||    
T  9031707 tatccaaaaaataaactagttaatttcttcaaaagttcaatcattctaaagtttcttaatatcattatcattggtgt 9031783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 24 - 102
Target Start/End: Original strand, 9030645 - 9030723
Alignment:
Q  24 atcaaaatacaaaattaatttgcaaaattagaagtttcataagactttaaaccatccgaaaaaccaagtttcaaaagtt 102  Q
    |||||||||||||||||| ||||||||| | ||||||  |||||||||||||||||| | ||| ||||||| |||||||    
T  9030645 atcaaaatacaaaattaacttgcaaaatcataagtttggtaagactttaaaccatccaataaagcaagttttaaaagtt 9030723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 100 - 150
Target Start/End: Complemental strand, 49458820 - 49458770
Alignment:
Q  100 gttaataaacctatccaaaaaataaactagttaattttttcaaaagttcaa 150  Q
    ||||||||| ||||| ||||||||||||||||||||| |||||||| ||||    
T  49458820 gttaataaaactatctaaaaaataaactagttaatttcttcaaaaggtcaa 49458770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 100 - 145
Target Start/End: Original strand, 21386134 - 21386179
Alignment:
Q  100 gttaataaacctatccaaaaaataaactagttaattttttcaaaag 145  Q
    ||||||||| || |||||||||||||||||||||||| ||||||||    
T  21386134 gttaataaaactgtccaaaaaataaactagttaatttcttcaaaag 21386179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 127 - 191
Target Start/End: Original strand, 2118176 - 2118240
Alignment:
Q  127 tagttaattttttcaaaagttcaatccttctaaagttccagaatatcattatcatcggtgttttc 191  Q
    |||||||||||||||||||||| ||| ||||||| ||  | || ||||||||||||||| |||||    
T  2118176 tagttaattttttcaaaagttcgatctttctaaatttttataacatcattatcatcggtattttc 2118240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 103 - 166
Target Start/End: Complemental strand, 53836380 - 53836318
Alignment:
Q  103 aataaacctatccaaaaaataaactagttaattttttcaaaagttcaatccttctaaagttcca 166  Q
    |||||| |||||||||||| ||||||| |||||| ||| |||| ||||| ||||||||||||||    
T  53836380 aataaaactatccaaaaaacaaactaggtaatttcttcgaaaggtcaat-cttctaaagttcca 53836318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 103 - 145
Target Start/End: Original strand, 4962359 - 4962401
Alignment:
Q  103 aataaacctatccaaaaaataaactagttaattttttcaaaag 145  Q
    |||||| ||||| ||||||||||||||||||||| ||||||||    
T  4962359 aataaaactatctaaaaaataaactagttaatttcttcaaaag 4962401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 100 - 150
Target Start/End: Complemental strand, 33693720 - 33693670
Alignment:
Q  100 gttaataaacctatccaaaaaataaactagttaattttttcaaaagttcaa 150  Q
    ||||||||| ||||| ||||||||||||| ||||||| |||||||| ||||    
T  33693720 gttaataaaactatctaaaaaataaactacttaatttcttcaaaaggtcaa 33693670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 100 - 144
Target Start/End: Original strand, 7437194 - 7437238
Alignment:
Q  100 gttaataaacctatccaaaaaataaactagttaattttttcaaaa 144  Q
    ||||||||| ||||| ||||||||||||||||||||  |||||||    
T  7437194 gttaataaaactatctaaaaaataaactagttaattacttcaaaa 7437238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 24 - 96
Target Start/End: Original strand, 30238127 - 30238199
Alignment:
Q  24 atcaaaatacaaaattaatttgcaaaattagaagtttcataagactttaaaccatccgaaaaaccaagtttca 96  Q
    |||||||||||||||||| ||| ||||| |  | |||||| ||||| |||||||||| ||||  |||||||||    
T  30238127 atcaaaatacaaaattaaattgaaaaatcatgattttcattagactctaaaccatccaaaaatacaagtttca 30238199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 72; Significance: 6e-33; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 100 - 187
Target Start/End: Original strand, 33177515 - 33177602
Alignment:
Q  100 gttaataaacctatccaaaaaataaactagttaattttttcaaaagttcaatccttctaaagttccagaatatcattatcatcggtgt 187  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || || ||||||||||| |||||    
T  33177515 gttaataaacctatccaaaaaataaactagttaattttttcaaaagttcaatccttctaaagtttcataacatcattatcattggtgt 33177602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 24 - 187
Target Start/End: Original strand, 4870705 - 4870879
Alignment:
Q  24 atcaaaatacaaaattaatttgcaaaattagaagtttcataagacttt--aaaccatccgaaaaaccaagtttca-----aaagtt---aataaacctat 113  Q
    ||||||||| |||||||| ||||||||| | |||||||||||||  ||  ||||||| | || || |||||||||     ||||||   |||||| ||||    
T  4870705 atcaaaatagaaaattaacttgcaaaatcataagtttcataagagattgtaaaccattcaaagaaacaagtttcacatataaagttgttaataaaactat 4870804  T
Q  114 ccaaaa-aataaactagttaattttttcaaaagttcaatccttctaaagttccagaatatcattatcatcggtgt 187  Q
    |||||| ||||||||||||||||  |||||||||||||||| |||||| || || || ||||||||||| |||||    
T  4870805 ccaaaaaaataaactagttaattacttcaaaagttcaatccgtctaaaatttcataacatcattatcattggtgt 4870879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 24 - 78
Target Start/End: Original strand, 33177425 - 33177479
Alignment:
Q  24 atcaaaatacaaaattaatttgcaaaattagaagtttcataagactttaaaccat 78  Q
    |||||||||||||||||| ||||||||| | ||||||||||||||| ||||||||    
T  33177425 atcaaaatacaaaattaacttgcaaaatcataagtttcataagactctaaaccat 33177479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 103 - 181
Target Start/End: Complemental strand, 19484635 - 19484558
Alignment:
Q  103 aataaacctatccaaaaaataaactagttaattttttcaaaagttcaatccttctaaagttccagaatatcattatcat 181  Q
    |||||| |||||||||||| ||||||| |||||| ||| |||| ||||| |||||||||||||| || |||||| ||||    
T  19484635 aataaaactatccaaaaaacaaactaggtaatttcttcgaaaggtcaat-cttctaaagttccataacatcattctcat 19484558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 100 - 150
Target Start/End: Original strand, 27915201 - 27915251
Alignment:
Q  100 gttaataaacctatccaaaaaataaactagttaattttttcaaaagttcaa 150  Q
    ||||||||| ||||| ||||||||||||||||||||| |||||||| ||||    
T  27915201 gttaataaaactatctaaaaaataaactagttaatttcttcaaaaggtcaa 27915251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 100 - 150
Target Start/End: Original strand, 27961620 - 27961670
Alignment:
Q  100 gttaataaacctatccaaaaaataaactagttaattttttcaaaagttcaa 150  Q
    ||||||||| ||||| ||||||||||||||||||||| |||||||| ||||    
T  27961620 gttaataaaactatctaaaaaataaactagttaatttcttcaaaaggtcaa 27961670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 100 - 150
Target Start/End: Complemental strand, 42423659 - 42423609
Alignment:
Q  100 gttaataaacctatccaaaaaataaactagttaattttttcaaaagttcaa 150  Q
    ||||||||| ||||| ||||||||||||||||||||| |||||||| ||||    
T  42423659 gttaataaaactatctaaaaaataaactagttaatttcttcaaaaggtcaa 42423609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 100 - 145
Target Start/End: Complemental strand, 44977185 - 44977140
Alignment:
Q  100 gttaataaacctatccaaaaaataaactagttaattttttcaaaag 145  Q
    ||||||||| ||||| ||||||||||||||||||||| ||||||||    
T  44977185 gttaataaaactatctaaaaaataaactagttaatttcttcaaaag 44977140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 102 - 150
Target Start/End: Original strand, 27878259 - 27878307
Alignment:
Q  102 taataaacctatccaaaaaataaactagttaattttttcaaaagttcaa 150  Q
    ||||||| ||||| ||||||||||||||||||||| |||||||| ||||    
T  27878259 taataaaactatctaaaaaataaactagttaatttcttcaaaaggtcaa 27878307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 102 - 150
Target Start/End: Original strand, 28018440 - 28018488
Alignment:
Q  102 taataaacctatccaaaaaataaactagttaattttttcaaaagttcaa 150  Q
    ||||||| ||||| ||||||||||||||||||||| |||||||| ||||    
T  28018440 taataaaactatctaaaaaataaactagttaatttcttcaaaaggtcaa 28018488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 100 - 146
Target Start/End: Original strand, 8029498 - 8029544
Alignment:
Q  100 gttaataaacctatccaaaaaataaactagttaattttttcaaaagt 146  Q
    ||||||||| ||||| ||||||||||||||||||||| || ||||||    
T  8029498 gttaataaaactatctaaaaaataaactagttaatttcttaaaaagt 8029544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 100 - 150
Target Start/End: Original strand, 12522051 - 12522101
Alignment:
Q  100 gttaataaacctatccaaaaaataaactagttaattttttcaaaagttcaa 150  Q
    |||| |||| ||||| ||||||||||||||||||||| |||||||| ||||    
T  12522051 gttattaaaactatcaaaaaaataaactagttaatttcttcaaaaggtcaa 12522101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 67; Significance: 6e-30; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 17 - 193
Target Start/End: Original strand, 40317211 - 40317411
Alignment:
Q  17 acttataatcaaaatacaaaattaatttgcaaaattagaagtttcataagactttaaaccatcc------------gaaaaaccaagtttcaaaagtt-- 102  Q
    ||||| ||||||||||||||||||| ||||||||| | ||||||||| ||||||||||||||||            |||||||||||||||| |||||      
T  40317211 acttagaatcaaaatacaaaattaacttgcaaaatcataagtttcattagactttaaaccatccaaagaaccatccgaaaaaccaagtttcagaagtttc 40317310  T
Q  103 ----------aataaacctatccaaaaaataaactagttaattttttcaaaagttcaatccttctaaagttccagaatatcattatcatcggtgttttct 192  Q
              |||||| |||| |||||||| ||||||||||||| |||||||| |||||||||||||||||||| || ||||||||||||||||||||||    
T  40317311 taaagttattaataaatctattcaaaaaatgaactagttaatttcttcaaaagatcaatccttctaaagttccacaacatcattatcatcggtgttttct 40317410  T
Q  193 t 193  Q
    |    
T  40317411 t 40317411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 17 - 193
Target Start/End: Original strand, 40327285 - 40327485
Alignment:
Q  17 acttataatcaaaatacaaaattaatttgcaaaattagaagtttcataagactttaaaccatcc------------gaaaaaccaagtttcaaaagtt-- 102  Q
    ||||| ||||||||||||||||||| ||||||||| | ||||||||| ||||||||||||||||            |||||||||||||||| |||||      
T  40327285 acttagaatcaaaatacaaaattaacttgcaaaatcataagtttcattagactttaaaccatccaaagaaccatccgaaaaaccaagtttcagaagtttc 40327384  T
Q  103 ----------aataaacctatccaaaaaataaactagttaattttttcaaaagttcaatccttctaaagttccagaatatcattatcatcggtgttttct 192  Q
              |||||| |||| |||||||| ||||||||||||| |||||||| |||||||||||||||||||| || ||||||||||||||||||||||    
T  40327385 taaagttattaataaatctattcaaaaaatgaactagttaatttcttcaaaagatcaatccttctaaagttccacaacatcattatcatcggtgttttct 40327484  T
Q  193 t 193  Q
    |    
T  40327485 t 40327485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 100 - 183
Target Start/End: Original strand, 25842629 - 25842712
Alignment:
Q  100 gttaataaacctatccaaaaaataaactagttaattttttcaaaagttcaatccttctaaagttccagaatatcattatcatcg 183  Q
    ||||||||| ||||||||||||||||||||||||||| |||||||| |||||  || |||||||||| || |||||||||||||    
T  25842629 gttaataaagctatccaaaaaataaactagttaatttcttcaaaagatcaatgtttttaaagttccataacatcattatcatcg 25842712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 101 - 161
Target Start/End: Complemental strand, 26955731 - 26955671
Alignment:
Q  101 ttaataaacctatccaaaaaataaactagttaattttttcaaaagttcaatccttctaaag 161  Q
    |||||||| ||||||||||||||||| | ||||||| ||||||||||||||| || |||||    
T  26955731 ttaataaaactatccaaaaaataaacaatttaatttcttcaaaagttcaatctttttaaag 26955671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 100 - 150
Target Start/End: Complemental strand, 32890330 - 32890280
Alignment:
Q  100 gttaataaacctatccaaaaaataaactagttaattttttcaaaagttcaa 150  Q
    ||||||||| ||||| ||||||||||||||||||||| |||||||| ||||    
T  32890330 gttaataaaactatctaaaaaataaactagttaatttcttcaaaaggtcaa 32890280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 100 - 144
Target Start/End: Original strand, 46862591 - 46862635
Alignment:
Q  100 gttaataaacctatccaaaaaataaactagttaattttttcaaaa 144  Q
    ||||||||| ||||| ||||||||||||||||||||| |||||||    
T  46862591 gttaataaaactatctaaaaaataaactagttaatttcttcaaaa 46862635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 103 - 166
Target Start/End: Complemental strand, 29469585 - 29469523
Alignment:
Q  103 aataaacctatccaaaaaataaactagttaattttttcaaaagttcaatccttctaaagttcca 166  Q
    |||||| |||||||||||| ||||||| |||||| ||| |||| ||||| ||||||||||||||    
T  29469585 aataaaactatccaaaaaacaaactaggtaatttcttcgaaaggtcaat-cttctaaagttcca 29469523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 72 - 150
Target Start/End: Original strand, 35518124 - 35518205
Alignment:
Q  72 aaaccatccgaaaaaccaagtttcaaaagtt---aataaacctatccaaaaaataaactagttaattttttcaaaagttcaa 150  Q
    ||||||||| ||||| ||| |||| ||||||   |||||| |||| ||| |||||||||||||||||| |||||||| ||||    
T  35518124 aaaccatccaaaaaaacaaatttctaaagttgttaataaaactattcaataaataaactagttaatttcttcaaaaggtcaa 35518205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 100 - 150
Target Start/End: Original strand, 24966138 - 24966188
Alignment:
Q  100 gttaataaacctatccaaaaaataaactagttaattttttcaaaagttcaa 150  Q
    ||||||||| ||||| |||||| |||||||||||||| |||||||| ||||    
T  24966138 gttaataaaactatctaaaaaacaaactagttaatttcttcaaaaggtcaa 24966188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 100 - 150
Target Start/End: Original strand, 29509708 - 29509758
Alignment:
Q  100 gttaataaacctatccaaaaaataaactagttaattttttcaaaagttcaa 150  Q
    ||||||||| ||||| ||||||||||| ||||||||| |||||||| ||||    
T  29509708 gttaataaaactatctaaaaaataaaccagttaatttcttcaaaaggtcaa 29509758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 100 - 150
Target Start/End: Complemental strand, 50517569 - 50517519
Alignment:
Q  100 gttaataaacctatccaaaaaataaactagttaattttttcaaaagttcaa 150  Q
    ||||||||| | ||| ||||||||||||||||||||| |||||||| ||||    
T  50517569 gttaataaatccatctaaaaaataaactagttaatttcttcaaaaggtcaa 50517519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 67; Significance: 6e-30; HSPs: 15)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 24 - 187
Target Start/End: Complemental strand, 226458 - 226278
Alignment:
Q  24 atcaaaatacaaaattaatttgcaaaattagaagtttcataagactttaaaccatccgaa----aaaccaagtttcaaaagtt------------aataa 107  Q
    |||||||||||||||||| ||||||||| | ||||||||||||||| |||||||||| ||    ||| ||||||||| |||||            |||||    
T  226458 atcaaaatacaaaattaacttgcaaaatcataagtttcataagactctaaaccatccaaattaaaaagcaagtttcataagtttctaaagttgttaataa 226359  T
Q  108 acctatccaaaaaataaactagttaattttttcaaaagttcaatcctt-ctaaagttccagaatatcattatcatcggtgt 187  Q
    ||||||| ||||||||||||||||||||||||||||||||||||| || |||||||| || || |||||||||||||||||    
T  226358 acctatctaaaaaataaactagttaattttttcaaaagttcaatctttcctaaagtttcataacatcattatcatcggtgt 226278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 24 - 148
Target Start/End: Complemental strand, 46042431 - 46042295
Alignment:
Q  24 atcaaaatacaaaattaatttgcaaaattagaagtttcataagactttaaaccatccgaaaaaccaagtttcaaaa------------gttaataaacct 111  Q
    |||||||||||||| ||| ||||||||| | ||||||||||||| | |||||||||| |||||  |||||||| ||            ||||||||||||    
T  46042431 atcaaaatacaaaaataacttgcaaaatcataagtttcataagattctaaaccatccaaaaaagtaagtttcacaattttctaaagttgttaataaacct 46042332  T
Q  112 atccaaaaaataaactagttaattttttcaaaagttc 148  Q
    |||||||||||||||||||||||||  ||||||||||    
T  46042331 atccaaaaaataaactagttaatttcgtcaaaagttc 46042295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 24 - 182
Target Start/End: Original strand, 42637701 - 42637872
Alignment:
Q  24 atcaaaatacaaaattaatttgcaaaattagaagtttcataagactttaaaccatccgaaaaaccaagtttcaaaagttaataaa-----------ccta 112  Q
    |||||||||||||||||| ||||||||| | ||||||||||||||| |||||||||| ||||| |||||| || |||||  ||||           | ||    
T  42637701 atcaaaatacaaaattaacttgcaaaatcataagtttcataagactctaaaccatccaaaaaagcaagttgcacaagtttctaaagttgttaataacata 42637800  T
Q  113 tccaaaaaata--aactagttaattttttcaaaagttcaatccttctaaagttccagaatatcattatcatc 182  Q
    ||||||||| |  |||||| |||||| ||||||||| |||||||| | |||||||| || ||||||||||||    
T  42637801 tccaaaaaaaagaaactagctaatttcttcaaaagtccaatccttttgaagttccataacatcattatcatc 42637872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 103 - 182
Target Start/End: Original strand, 5208933 - 5209011
Alignment:
Q  103 aataaacctatccaaaaaataaactagttaattttttcaaaagttcaatccttctaaagttccagaatatcattatcatc 182  Q
    |||||| |||||||||||| ||||||| |||||| |||||||| ||||| |||||||||||||| || |||||| |||||    
T  5208933 aataaaactatccaaaaaacaaactaggtaatttcttcaaaaggtcaat-cttctaaagttccataacatcattctcatc 5209011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 103 - 182
Target Start/End: Original strand, 1242960 - 1243038
Alignment:
Q  103 aataaacctatccaaaaaataaactagttaattttttcaaaagttcaatccttctaaagttccagaatatcattatcatc 182  Q
    |||||| |||||||||||| ||||||| |||||| ||| |||| ||||| |||||||||||||| || |||||| |||||    
T  1242960 aataaaactatccaaaaaacaaactaggtaatttcttcgaaaggtcaat-cttctaaagttccataacatcattctcatc 1243038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 103 - 181
Target Start/End: Complemental strand, 41353863 - 41353786
Alignment:
Q  103 aataaacctatccaaaaaataaactagttaattttttcaaaagttcaatccttctaaagttccagaatatcattatcat 181  Q
    |||||| |||||||||||| ||||||| |||||| ||| |||| ||||| |||||||||||||| || |||||| ||||    
T  41353863 aataaaactatccaaaaaacaaactaggtaatttcttcgaaaggtcaat-cttctaaagttccataacatcattctcat 41353786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 102 - 150
Target Start/End: Original strand, 48966153 - 48966201
Alignment:
Q  102 taataaacctatccaaaaaataaactagttaattttttcaaaagttcaa 150  Q
    ||||||| ||||| ||||||||||||||||||||| |||||||| ||||    
T  48966153 taataaaactatctaaaaaataaactagttaatttcttcaaaaggtcaa 48966201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 100 - 144
Target Start/End: Original strand, 49452705 - 49452749
Alignment:
Q  100 gttaataaacctatccaaaaaataaactagttaattttttcaaaa 144  Q
    ||||||||| ||||| ||||||||||||||||||||| |||||||    
T  49452705 gttaataaaactatctaaaaaataaactagttaatttcttcaaaa 49452749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 103 - 182
Target Start/End: Complemental strand, 8147784 - 8147706
Alignment:
Q  103 aataaacctatccaaaaaataaactagttaattttttcaaaagttcaatccttctaaagttccagaatatcattatcatc 182  Q
    |||||| |||||||||||  ||||||| |||||| ||| |||| ||||| |||||||||||||| || |||||| |||||    
T  8147784 aataaaactatccaaaaaccaaactaggtaatttcttcgaaaggtcaat-cttctaaagttccataacatcattctcatc 8147706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 103 - 166
Target Start/End: Original strand, 11578779 - 11578841
Alignment:
Q  103 aataaacctatccaaaaaataaactagttaattttttcaaaagttcaatccttctaaagttcca 166  Q
    |||||| |||||||||||| ||||||| |||||| ||| |||| ||||| ||||||||||||||    
T  11578779 aataaaactatccaaaaaacaaactaggtaatttcttcgaaaggtcaat-cttctaaagttcca 11578841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 100 - 143
Target Start/End: Original strand, 32759747 - 32759790
Alignment:
Q  100 gttaataaacctatccaaaaaataaactagttaattttttcaaa 143  Q
    ||||||||| ||||| ||||||||||||||||||||| ||||||    
T  32759747 gttaataaaactatctaaaaaataaactagttaatttcttcaaa 32759790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 100 - 150
Target Start/End: Original strand, 28403626 - 28403676
Alignment:
Q  100 gttaataaacctatccaaaaaataaactagttaattttttcaaaagttcaa 150  Q
    ||||||||| ||||  ||||||||||||||||||||| |||||||| ||||    
T  28403626 gttaataaaactatttaaaaaataaactagttaatttcttcaaaaggtcaa 28403676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 100 - 150
Target Start/End: Original strand, 49236643 - 49236693
Alignment:
Q  100 gttaataaacctatccaaaaaataaactagttaattttttcaaaagttcaa 150  Q
    ||||||||| ||||| ||||||||||||||||||||| || ||||| ||||    
T  49236643 gttaataaaactatctaaaaaataaactagttaatttctttaaaaggtcaa 49236693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 100 - 145
Target Start/End: Complemental strand, 3593691 - 3593646
Alignment:
Q  100 gttaataaacctatccaaaaaataaactagttaattttttcaaaag 145  Q
    ||||||||| ||||| |||||||||||| |||||||| ||||||||    
T  3593691 gttaataaaactatctaaaaaataaacttgttaatttcttcaaaag 3593646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 110 - 158
Target Start/End: Original strand, 2292900 - 2292948
Alignment:
Q  110 ctatccaaaaaataaactagttaattttttcaaaagttcaatccttcta 158  Q
    |||| |||||||||||| | ||||||| |||||||||| ||||||||||    
T  2292900 ctatacaaaaaataaacaaattaatttcttcaaaagtttaatccttcta 2292948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 65; Significance: 9e-29; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 65; E-Value: 9e-29
Query Start/End: Original strand, 24 - 187
Target Start/End: Original strand, 37810449 - 37810626
Alignment:
Q  24 atcaaaatacaaaattaatttgcaaaattagaagtttcataagactttaaaccatccgaaaaaccaagtttca---------aaagtt---aataaacct 111  Q
    |||||||||||||||||| || |||||| | ||||||||||||||| |||||||||||||| |  ||||||||         ||||||   |||||||||    
T  37810449 atcaaaatacaaaattaacttacaaaatcataagtttcataagactctaaaccatccgaaagagtaagtttcacatgttgataaagttgttaataaacct 37810548  T
Q  112 atccaaaaaataaactagttaattttttcaaaagttcaatccttc--taaagttccagaatatcattatcatcggtgt 187  Q
    ||||||||||||||||||||||||| ||||||||||||||| |||  ||| ||| ||||| |||||||||||| ||||    
T  37810549 atccaaaaaataaactagttaatttcttcaaaagttcaatctttctataaggtttcagaacatcattatcatcagtgt 37810626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 100 - 185
Target Start/End: Complemental strand, 24026249 - 24026164
Alignment:
Q  100 gttaataaacctatccaaaaaataaactagttaattttttcaaaagttcaatccttctaaagttccagaatatcattatcatcggt 185  Q
    ||||||||| ||||||||||||||||||||||||||| |||||||||||| |||||||||| || || || |||||||||||||||    
T  24026249 gttaataaaactatccaaaaaataaactagttaatttcttcaaaagttcagtccttctaaaatttcataacatcattatcatcggt 24026164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 100 - 163
Target Start/End: Complemental strand, 32294309 - 32294246
Alignment:
Q  100 gttaataaacctatccaaaaaataaactagttaattttttcaaaagttcaatccttctaaagtt 163  Q
    ||||||||| ||||||||||||||||||||||||||| |||||||| ||||||||| |||||||    
T  32294309 gttaataaaactatccaaaaaataaactagttaatttcttcaaaagatcaatccttttaaagtt 32294246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 100 - 161
Target Start/End: Complemental strand, 30850838 - 30850777
Alignment:
Q  100 gttaataaacctatccaaaaaataaactagttaattttttcaaaagttcaatccttctaaag 161  Q
    ||||||||| ||||||| ||||||| | ||||||||| ||||||||||||||||||||||||    
T  30850838 gttaataaaactatccataaaataaccaagttaatttattcaaaagttcaatccttctaaag 30850777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 102 - 182
Target Start/End: Original strand, 2308394 - 2308474
Alignment:
Q  102 taataaacctatccaaaaaataaactagttaattttttcaaaagttcaatccttctaaagttccagaatatcattatcatc 182  Q
    |||||||  ||||||||||||||||||  |||||| |||||||| ||||| |||||||||||||| || |||||| |||||    
T  2308394 taataaaattatccaaaaaataaactaaataatttcttcaaaaggtcaatgcttctaaagttccataacatcattttcatc 2308474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 103 - 182
Target Start/End: Original strand, 18899582 - 18899660
Alignment:
Q  103 aataaacctatccaaaaaataaactagttaattttttcaaaagttcaatccttctaaagttccagaatatcattatcatc 182  Q
    |||||| |||||||||||| ||||||| |||||| ||| |||| ||||| |||||||||||||| || |||||| |||||    
T  18899582 aataaaactatccaaaaaacaaactaggtaatttcttcgaaaggtcaat-cttctaaagttccataacatcattctcatc 18899660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 112 - 187
Target Start/End: Complemental strand, 28546220 - 28546146
Alignment:
Q  112 atccaaaaaataaactagttaattttttcaaaagttcaatccttctaaagttccagaatatcattatcatcggtgt 187  Q
    |||||||||| |||||||||||||| ||||||| ||||||| ||||| | ||||| || ||| |||||||||||||    
T  28546220 atccaaaaaa-aaactagttaatttcttcaaaaattcaatctttctagatttccataacatccttatcatcggtgt 28546146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 100 - 150
Target Start/End: Original strand, 31846813 - 31846863
Alignment:
Q  100 gttaataaacctatccaaaaaataaactagttaattttttcaaaagttcaa 150  Q
    ||||||||| ||||| ||||||||||||||||||||| |||||||| ||||    
T  31846813 gttaataaaactatctaaaaaataaactagttaatttcttcaaaaggtcaa 31846863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 120 - 176
Target Start/End: Original strand, 32241928 - 32241984
Alignment:
Q  120 aataaactagttaattttttcaaaagttcaatccttctaaagttccagaatatcatt 176  Q
    ||||||||||||||||| |||||||| ||||||||| |||| ||||| || ||||||    
T  32241928 aataaactagttaatttcttcaaaagatcaatccttttaaaattccataacatcatt 32241984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 100 - 150
Target Start/End: Complemental strand, 9731399 - 9731349
Alignment:
Q  100 gttaataaacctatccaaaaaataaactagttaattttttcaaaagttcaa 150  Q
    ||||||||| ||||| ||||||||||||| ||||||| |||||||| ||||    
T  9731399 gttaataaaactatctaaaaaataaactaattaatttcttcaaaaggtcaa 9731349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 100 - 150
Target Start/End: Complemental strand, 34342698 - 34342648
Alignment:
Q  100 gttaataaacctatccaaaaaataaactagttaattttttcaaaagttcaa 150  Q
    ||||||||| ||||| ||||||||||||||||||||| || ||||| ||||    
T  34342698 gttaataaaactatctaaaaaataaactagttaatttcttgaaaaggtcaa 34342648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 102 - 144
Target Start/End: Original strand, 38295371 - 38295413
Alignment:
Q  102 taataaacctatccaaaaaataaactagttaattttttcaaaa 144  Q
    ||||||| ||||| ||||||||||||||||||||| |||||||    
T  38295371 taataaaactatctaaaaaataaactagttaatttcttcaaaa 38295413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 100 - 145
Target Start/End: Original strand, 18727288 - 18727333
Alignment:
Q  100 gttaataaacctatccaaaaaataaactagttaattttttcaaaag 145  Q
    ||||||||| |||| |||||||| ||||||||||||| ||||||||    
T  18727288 gttaataaaactattcaaaaaatcaactagttaatttcttcaaaag 18727333  T

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Target: chr7 (Bit Score: 60; Significance: 9e-26; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 100 - 183
Target Start/End: Original strand, 1254165 - 1254248
Alignment:
Q  100 gttaataaacctatccaaaaaataaactagttaattttttcaaaagttcaatccttctaaagttccagaatatcattatcatcg 183  Q
    |||||||||||||||||||||||||| |||||| ||| |||||||||||||||||||||||||| || || |||||||||||||    
T  1254165 gttaataaacctatccaaaaaataaattagttagtttcttcaaaagttcaatccttctaaagtttcataacatcattatcatcg 1254248  T

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Target: chr7; HSP #2
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 24 - 180
Target Start/End: Complemental strand, 6268989 - 6268821
Alignment:
Q  24 atcaaaatacaaaattaatttgcaaaattagaagtttcataagactttaaaccatccgaaaaaccaagtttcaaaagtt------------aataaacct 111  Q
    |||||||||||||||||| ||||||||| | || ||| | |||||| |||||||| | ||||| ||||||||| |||||            |||||||||    
T  6268989 atcaaaatacaaaattaacttgcaaaatcataacttttacaagactctaaaccattcaaaaaaacaagtttcacaagtttctaaagttgttaataaacct 6268890  T
Q  112 atccaaaaaataaactagttaattttttcaaaagttcaatccttctaaagttccagaatatcattatca 180  Q
    || ||| ||| ||||||||||||||||||||||||||||||||| ||||||| || || ||||||||||    
T  6268889 attcaagaaacaaactagttaattttttcaaaagttcaatccttttaaagtttcataacatcattatca 6268821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 100 - 150
Target Start/End: Complemental strand, 23017438 - 23017388
Alignment:
Q  100 gttaataaacctatccaaaaaataaactagttaattttttcaaaagttcaa 150  Q
    ||||||||| ||||| |||||||||||||||||||||||||||||| ||||    
T  23017438 gttaataaaactatctaaaaaataaactagttaattttttcaaaaggtcaa 23017388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 103 - 182
Target Start/End: Complemental strand, 14741873 - 14741795
Alignment:
Q  103 aataaacctatccaaaaaataaactagttaattttttcaaaagttcaatccttctaaagttccagaatatcattatcatc 182  Q
    |||||| |||||||||||| ||||||| |||||| ||| |||| ||||| |||||||||||||| || |||||| |||||    
T  14741873 aataaaactatccaaaaaacaaactaggtaatttcttcgaaaggtcaat-cttctaaagttccataacatcattctcatc 14741795  T

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Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 103 - 181
Target Start/End: Original strand, 4639553 - 4639630
Alignment:
Q  103 aataaacctatccaaaaaataaactagttaattttttcaaaagttcaatccttctaaagttccagaatatcattatcat 181  Q
    |||||| |||||||||||| ||||||| |||||| ||| |||| ||||| |||||||||||||| || |||||| ||||    
T  4639553 aataaaactatccaaaaaacaaactaggtaatttcttcgaaaggtcaat-cttctaaagttccataacatcattctcat 4639630  T

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Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 100 - 150
Target Start/End: Complemental strand, 43172520 - 43172470
Alignment:
Q  100 gttaataaacctatccaaaaaataaactagttaattttttcaaaagttcaa 150  Q
    ||||||||| ||||| ||||||||||||||||||||| |||||||| ||||    
T  43172520 gttaataaaactatctaaaaaataaactagttaatttcttcaaaaggtcaa 43172470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 100 - 150
Target Start/End: Complemental strand, 21486591 - 21486540
Alignment:
Q  100 gttaataaacctatccaaaaaa-taaactagttaattttttcaaaagttcaa 150  Q
    ||||||||| ||||| |||||| |||||||||||||||||||||||| ||||    
T  21486591 gttaataaaactatctaaaaaaataaactagttaattttttcaaaaggtcaa 21486540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 56; Significance: 2e-23; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 32 - 187
Target Start/End: Original strand, 21010481 - 21010647
Alignment:
Q  32 acaaaattaatttgcaaaattagaagtttcataagactttaaaccatccgaaaaac--------caagtttcaaaagtt---aataaacctatccaaaaa 120  Q
    |||||||||| ||||||||| | || |||||||||||| |||||||||| |||||         |||||||| ||||||   ||| |||||||| |||      
T  21010481 acaaaattaacttgcaaaatcataaatttcataagactctaaaccatccaaaaaataagtttcacaagtttctaaagttgttaattaacctatcaaaatt 21010580  T
Q  121 ataaactagttaattttttcaaaagttcaatccttctaaagttccagaatatcattatcatcggtgt 187  Q
    |||||||||||||||| |||||||||||||||||| ||||||| || || |||||||||||||||||    
T  21010581 ataaactagttaatttcttcaaaagttcaatccttataaagtttcataacatcattatcatcggtgt 21010647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 24 - 161
Target Start/End: Original strand, 15381145 - 15381286
Alignment:
Q  24 atcaaaatacaaaa-ttaatttgcaaaattagaagtttcataagactttaaaccatccgaaaaaccaagtttcaaaa---gttaataaacctatccaaaa 119  Q
    |||||||||||||| |||||   |||||| | ||||||| |||| || ||| |||||| ||||| |||||||| |||   ||||||||| ||||||||||    
T  15381145 atcaaaatacaaaaattaatgcacaaaatcataagtttcttaagtctctaagccatccaaaaaagcaagtttctaaaattgttaataaaactatccaaaa 15381244  T
Q  120 aataaactagttaattttttcaaaagttcaatccttctaaag 161  Q
    ||||||| ||||||||| |||||| |||||| ||||||||||    
T  15381245 aataaacaagttaatttcttcaaacgttcaacccttctaaag 15381286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 100 - 150
Target Start/End: Complemental strand, 16439155 - 16439105
Alignment:
Q  100 gttaataaacctatccaaaaaataaactagttaattttttcaaaagttcaa 150  Q
    ||||||||| ||||| ||||||||||||||||||||| |||||||| ||||    
T  16439155 gttaataaaactatctaaaaaataaactagttaatttcttcaaaaggtcaa 16439105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 100 - 150
Target Start/End: Original strand, 33640919 - 33640969
Alignment:
Q  100 gttaataaacctatccaaaaaataaactagttaattttttcaaaagttcaa 150  Q
    ||||||||| ||||| ||||||||||||||||||||| |||||||| ||||    
T  33640919 gttaataaaactatctaaaaaataaactagttaatttcttcaaaaggtcaa 33640969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 100 - 145
Target Start/End: Original strand, 28900477 - 28900522
Alignment:
Q  100 gttaataaacctatccaaaaaataaactagttaattttttcaaaag 145  Q
    ||||||||| ||||| ||||||||||||||||||||| ||||||||    
T  28900477 gttaataaaactatctaaaaaataaactagttaatttcttcaaaag 28900522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 139 - 187
Target Start/End: Complemental strand, 12029314 - 12029266
Alignment:
Q  139 tcaaaagttcaatccttctaaagttccagaatatcattatcatcggtgt 187  Q
    |||||||||||||| |||||||||| || || |||||||||||||||||    
T  12029314 tcaaaagttcaatcattctaaagtttcataacatcattatcatcggtgt 12029266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 100 - 150
Target Start/End: Complemental strand, 2607362 - 2607312
Alignment:
Q  100 gttaataaacctatccaaaaaataaactagttaattttttcaaaagttcaa 150  Q
    ||||| ||| ||||| |||||| ||||||||||||||||||||||| ||||    
T  2607362 gttaaaaaaactatctaaaaaagaaactagttaattttttcaaaaggtcaa 2607312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 100 - 145
Target Start/End: Complemental strand, 24194926 - 24194881
Alignment:
Q  100 gttaataaacctatccaaaaaataaactagttaattttttcaaaag 145  Q
    |||| |||| ||||| ||||||||||||||||||||| ||||||||    
T  24194926 gttattaaaactatctaaaaaataaactagttaatttcttcaaaag 24194881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 56; Significance: 2e-23; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 24 - 160
Target Start/End: Original strand, 36195939 - 36196084
Alignment:
Q  24 atcaaaatacaaaattaatttgcaaaattagaagtttcataagactttaaaccatccgaaaaac-caagtttca-----aaagtt---aataaacctatc 114  Q
    ||||||||| ||| |||| ||||||||| | ||| ||||||||||| |||||||||| |||||  |||||||||     ||||||   |||||| |||||    
T  36195939 atcaaaataaaaatttaacttgcaaaatcataagattcataagactctaaaccatccaaaaaaagcaagtttcacatataaagttgttaataaaactatc 36196038  T
Q  115 caaaaaataaactagttaattttttcaaaagttcaatccttctaaa 160  Q
    |||||||||||||||||||||| ||||||||||||| |||||||||    
T  36196039 caaaaaataaactagttaatttcttcaaaagttcaacccttctaaa 36196084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 24 - 136
Target Start/End: Complemental strand, 31913930 - 31913806
Alignment:
Q  24 atcaaaatacaaaattaatttgcaaaattagaagtttcataagactttaaaccatccgaaaaac-caagtttcaaaa------------gttaataaacc 110  Q
    |||||||||||||||||| ||||||| ||| ||||||||||||||| |||||||||| |||||| ||||||||| ||            |||||||||||    
T  31913930 atcaaaatacaaaattaacttgcaaa-ttataagtttcataagactctaaaccatccaaaaaacacaagtttcacaagtttttaaagttgttaataaacc 31913832  T
Q  111 tatccaaaaaataaactagttaattt 136  Q
    ||||||||||||||||||||||||||    
T  31913831 tatccaaaaaataaactagttaattt 31913806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 100 - 161
Target Start/End: Original strand, 15286140 - 15286201
Alignment:
Q  100 gttaataaacctatccaaaaaataaactagttaattttttcaaaagttcaatccttctaaag 161  Q
    ||||||||| ||||||||||||||||| ||||||||| ||||||||||||||||||| ||||    
T  15286140 gttaataaaactatccaaaaaataaacaagttaatttcttcaaaagttcaatccttcgaaag 15286201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 24 - 102
Target Start/End: Original strand, 16497471 - 16497548
Alignment:
Q  24 atcaaaatacaaaattaatttgcaaaattagaagtttcataagactttaaaccatccgaaaaaccaagtttcaaaagtt 102  Q
    |||||||||||||||||| ||||||||| | ||||||||||||||| | |||||||| ||||| ||||||||| |||||    
T  16497471 atcaaaatacaaaattaacttgcaaaatcataagtttcataagactct-aaccatccaaaaaagcaagtttcacaagtt 16497548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 103 - 182
Target Start/End: Original strand, 28622847 - 28622925
Alignment:
Q  103 aataaacctatccaaaaaataaactagttaattttttcaaaagttcaatccttctaaagttccagaatatcattatcatc 182  Q
    |||||| |||||||||||| ||||||| |||||| ||| |||| ||||| |||||||||||||| || |||||| |||||    
T  28622847 aataaaactatccaaaaaacaaactaggtaatttcttcgaaaggtcaat-cttctaaagttccataacatcattctcatc 28622925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 101 - 150
Target Start/End: Original strand, 29716548 - 29716597
Alignment:
Q  101 ttaataaacctatccaaaaaataaactagttaattttttcaaaagttcaa 150  Q
    |||||||| ||||| ||||||||||||||||||||| |||||||| ||||    
T  29716548 ttaataaaactatctaaaaaataaactagttaatttcttcaaaaggtcaa 29716597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 103 - 182
Target Start/End: Original strand, 5650452 - 5650530
Alignment:
Q  103 aataaacctatccaaaaaataaactagttaattttttcaaaagttcaatccttctaaagttccagaatatcattatcatc 182  Q
    |||||| ||||| |||||| ||| ||| |||||| |||||||| |||||| ||||||||||||| || |||||| |||||    
T  5650452 aataaaactatcaaaaaaacaaattaggtaatttcttcaaaaggtcaatc-ttctaaagttccataacatcattctcatc 5650530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0118 (Bit Score: 45; Significance: 8e-17; HSPs: 1)
Name: scaffold0118
Description:

Target: scaffold0118; HSP #1
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 100 - 160
Target Start/End: Complemental strand, 38287 - 38227
Alignment:
Q  100 gttaataaacctatccaaaaaataaactagttaattttttcaaaagttcaatccttctaaa 160  Q
    ||||||||| |||| |||||||||||||||||||||| |||||||||| ||||||||||||    
T  38287 gttaataaaactattcaaaaaataaactagttaatttcttcaaaagtttaatccttctaaa 38227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0573 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0573
Description:

Target: scaffold0573; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 100 - 145
Target Start/End: Complemental strand, 9317 - 9272
Alignment:
Q  100 gttaataaacctatccaaaaaataaactagttaattttttcaaaag 145  Q
    ||||||||| ||||| ||||||||||||||||||||| ||||||||    
T  9317 gttaataaaactatctaaaaaataaactagttaatttcttcaaaag 9272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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