View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11557A_low_45 (Length: 386)
Name: NF11557A_low_45
Description: NF11557A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11557A_low_45 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 277; Significance: 1e-155; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 94 - 386
Target Start/End: Complemental strand, 43502892 - 43502600
Alignment:
| Q |
94 |
atgggtcatttatagttctagttcttattcttaatatgtaatgtacgtacacacagctttgaacatccttaatggtgattgctattgtaaaaatagtgtt |
193 |
Q |
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| T |
43502892 |
atgggtcatttatagttctagttcttattcttaatatgtaatgtacgtacacacagctttgaacatccttaatggtgattgctattgtaaaaatagtgtt |
43502793 |
T |
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| Q |
194 |
tacaatacacgactattttcaagcattttgttccaatgaagtactcttcgtcctttctctaccaattactagtacttgatcagtgttaaccagagaagcc |
293 |
Q |
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| T |
43502792 |
tacaatacacgactattttcaagcattttgttgcaatgaagtactcttcgacctttctctaccaattactagtacttgatcagtgttaaccagagaagcc |
43502693 |
T |
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| Q |
294 |
atatagtgatatagagcttactagtactaccacacgcgttgaagcaaattgtggatgtgaaatgaagtaatatgtgaggtgtgctgtgctcac |
386 |
Q |
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| T |
43502692 |
atatagtgatacagagcttactagtactaccacacgcgttgaagcaaattgtggatgtgaaatgaaggaatatgtgaggtgtgctgtgctcac |
43502600 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 8 - 67
Target Start/End: Complemental strand, 43502963 - 43502904
Alignment:
| Q |
8 |
ttcgtgttatttatagctccacatttttccaccaaaattaaaaagctttatagttttcac |
67 |
Q |
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| T |
43502963 |
ttcgtgttatttatagctccacatttttccaccaaaattaaaaagctttatagttttcac |
43502904 |
T |
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