View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11557A_low_453 (Length: 209)
Name: NF11557A_low_453
Description: NF11557A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11557A_low_453 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 156; Significance: 5e-83; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 156; E-Value: 5e-83
Query Start/End: Original strand, 20 - 183
Target Start/End: Complemental strand, 10706792 - 10706629
Alignment:
| Q |
20 |
tcatgcaaggtcttaaggataatgctgcaaacctgcacggatcatcgattattggaggagcaccccgtctccaattgcggttgtcatctgttgctccacc |
119 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10706792 |
tcatgcaaggtcttaaggataatgctgcaaacctgcacggatcatcgataattggaggagcaccccgtctccaattgcggttgtcatctgttgctccacc |
10706693 |
T |
|
| Q |
120 |
tcctttgtgtaagaatgtaatgccaaatggcccaaatctgagcacacttaattctgacaattct |
183 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
10706692 |
tcctttgtgtaagaatgtaatgccaaatggcccaaatctgagcacacttgattctgacaattct |
10706629 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 94 - 183
Target Start/End: Original strand, 6387473 - 6387562
Alignment:
| Q |
94 |
ttgcggttgtcatctgttgctccacctcctttgtgtaagaatgtaatgccaaatggcccaaatctgagcacacttaattctgacaattct |
183 |
Q |
| |
|
|||| ||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6387473 |
ttgcagttgtcatctgttgctccaccccctttgtgtaggaatgtaatgccaaatggcccaaatctgagcacacttaattctgacaattct |
6387562 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 20 - 80
Target Start/End: Original strand, 6387101 - 6387161
Alignment:
| Q |
20 |
tcatgcaaggtcttaaggataatgctgcaaacctgcacggatcatcgattattggaggagc |
80 |
Q |
| |
|
||||||||||||||||||||| ||||||||||| ||||||||||| || ||||||||||| |
|
|
| T |
6387101 |
tcatgcaaggtcttaaggatattgctgcaaaccctcacggatcatctataattggaggagc |
6387161 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University