View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11557A_low_457 (Length: 207)
Name: NF11557A_low_457
Description: NF11557A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11557A_low_457 |
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| [»] scaffold0229 (1 HSPs) |
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Alignment Details
Target: scaffold0229 (Bit Score: 158; Significance: 3e-84; HSPs: 1)
Name: scaffold0229
Description:
Target: scaffold0229; HSP #1
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 32 - 189
Target Start/End: Complemental strand, 13724 - 13567
Alignment:
| Q |
32 |
cagagatgctatgaattaatatgctttggataacaaatttaactagttgtgttcttcctacaaatagataacagagaagcctttcaagctgagagtttga |
131 |
Q |
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| T |
13724 |
cagagatgctatgaattaatatgctttggataacaaatttaactagttgtgttcttcctacaaatagataacagagaagcctttcaagctgagagtttga |
13625 |
T |
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| Q |
132 |
ctttggttttatctgcaagcttcaaatcagttgcaaaaaagagaattaaactcaaaag |
189 |
Q |
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| T |
13624 |
ctttggttttatctgcaagcttcaaatcagttgcaaaaaagagaattaaactcaaaag |
13567 |
T |
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Target: chr6 (Bit Score: 158; Significance: 3e-84; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 32 - 189
Target Start/End: Complemental strand, 1212562 - 1212405
Alignment:
| Q |
32 |
cagagatgctatgaattaatatgctttggataacaaatttaactagttgtgttcttcctacaaatagataacagagaagcctttcaagctgagagtttga |
131 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1212562 |
cagagatgctatgaattaatatgctttggataacaaatttaactagttgtgttcttcctacaaatagataacagagaagcctttcaagctgagagtttga |
1212463 |
T |
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| Q |
132 |
ctttggttttatctgcaagcttcaaatcagttgcaaaaaagagaattaaactcaaaag |
189 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1212462 |
ctttggttttatctgcaagcttcaaatcagttgcaaaaaagagaattaaactcaaaag |
1212405 |
T |
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