View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11557A_low_458 (Length: 207)
Name: NF11557A_low_458
Description: NF11557A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11557A_low_458 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 199; Significance: 1e-108; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 1 - 207
Target Start/End: Complemental strand, 43030922 - 43030716
Alignment:
| Q |
1 |
agaggttttggggtaggaattctaagacaattcaaattaccaccagggatcactgaacactcaggttgaggtttctgcatattcctaccaggaatgcagt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43030922 |
agaggttttggggtaggaattctaagacaattcaaattaccaccagggatcactgaacactcaggttgaggtttctgcatattcctaccaggaatgcagt |
43030823 |
T |
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| Q |
101 |
tatctgaaaaatcaaaaccaacattgtaaagccttgaacattcttgactaaacccagaaaagaaattagaagtaacagttagattcaacaagcttctcaa |
200 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43030822 |
tatctgaaaaatcaaaaccaacattgaaaagccttgaacattcttgactaaacccagaaaagaaattagaagtaacagttagattcaacaagcttctcaa |
43030723 |
T |
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| Q |
201 |
agaacat |
207 |
Q |
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|||||| |
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| T |
43030722 |
tgaacat |
43030716 |
T |
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Target: chr6 (Bit Score: 64; Significance: 4e-28; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 1 - 206
Target Start/End: Original strand, 34200801 - 34201012
Alignment:
| Q |
1 |
agaggttttggggtaggaattctaagacaattcaaattaccaccagggatcactgaacactcaggttgaggtttctgcatattcctaccaggaatgcagt |
100 |
Q |
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||||||||||| || |||||||| |||||| | || ||||||| ||||||| |||||||||||||||||| | ||||| ||||| |||||||| || | |
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| T |
34200801 |
agaggttttggtgttggaattctgagacaacttaagctaccacctgggatcatagaacactcaggttgaggtctttgcatgttcctcccaggaatacaat |
34200900 |
T |
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| Q |
101 |
tatctgaaaaatcaaaaccaacatt-gtaa-----agccttgaacattcttgactaaacccagaaaagaaattagaagtaacagttagattcaacaagct |
194 |
Q |
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|| ||||||||||||||||||||| ||| ||| | ||||||| ||||||||||||||||||||||||| ||| |||||||| ||| ||| || |
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| T |
34200901 |
taagtgaaaaatcaaaaccaacattcctaaaaaacagcttagaacattgttgactaaacccagaaaagaaattataagcaacagttaaattagccaaact |
34201000 |
T |
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| Q |
195 |
tctcaaagaaca |
206 |
Q |
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||||||||||| |
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| T |
34201001 |
cctcaaagaaca |
34201012 |
T |
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