View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11557A_low_459 (Length: 207)
Name: NF11557A_low_459
Description: NF11557A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11557A_low_459 |
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Alignment Details
Target: chr4 (Bit Score: 146; Significance: 4e-77; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 146; E-Value: 4e-77
Query Start/End: Original strand, 20 - 188
Target Start/End: Complemental strand, 37180316 - 37180145
Alignment:
| Q |
20 |
catcaaactatcaatggcaatattcaaatccttcatcacaactttacttctagttgtgacaatatcaaacatgagcctagaagctcgtcatcttttgcaa |
119 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
37180316 |
catcaaactatcaatggcaatattcaaatccttcatcacaactttacttctagttgtgacaatatcaaacatgagcctagaagctcgccatcttttgcaa |
37180217 |
T |
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| Q |
120 |
---acaacacaaccaagtttaccaaccattcccactttaccaaaaccaacaacattaccacctttaccttca |
188 |
Q |
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| T |
37180216 |
actaccacacaaccaaatttaccaaccattcccactttaccaaaaccaacaacattaccacctttaccttca |
37180145 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 20 - 188
Target Start/End: Original strand, 37189538 - 37189709
Alignment:
| Q |
20 |
catcaaactatcaatggcaatattcaaatccttcatcacaactttacttctagttgtgacaatatcaaacatgagcctagaagctcgtcatcttttgcaa |
119 |
Q |
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||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
37189538 |
catcaaactatcaatggcaatattcaaatccttgatcacaactttacttctagttgtgacaatatcaaacatgagcctagaagctcgccatcttttgcaa |
37189637 |
T |
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| Q |
120 |
---acaacacaaccaagtttaccaaccattcccactttaccaaaaccaacaacattaccacctttaccttca |
188 |
Q |
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| T |
37189638 |
actaccacacaaccaaatttaccaaccattcccactttaccaaaaccaacaacattaccacctttaccttca |
37189709 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 94; E-Value: 4e-46
Query Start/End: Original strand, 44 - 188
Target Start/End: Original strand, 37181445 - 37181592
Alignment:
| Q |
44 |
caaatccttcatcacaactttacttctagttgtgacaatatcaaacatgagcctagaagctcgtcatcttttgcaaacaac---acaaccaagtttacca |
140 |
Q |
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| T |
37181445 |
caaatccttcattgcaactttacttcttgttgtcacaatgtcaagcatgagcctagaagctcgccatcttttgcaaactaccacacaaccaaatttacca |
37181544 |
T |
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| Q |
141 |
accattcccactttaccaaaaccaacaacattaccacctttaccttca |
188 |
Q |
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| T |
37181545 |
gccattcccactttaccaaaaccaacaacattaccacctttaccttca |
37181592 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 77; E-Value: 6e-36
Query Start/End: Original strand, 28 - 188
Target Start/End: Complemental strand, 37187988 - 37187828
Alignment:
| Q |
28 |
tatcaatggcaatattcaaatccttcatcacaactttacttctagttgtgacaatatcaaacatgagcctagaagctcgtcatcttttgcaaacaacaca |
127 |
Q |
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||||||||||| | |||||||||||||| | |||||||||| |||||||| || |||| |||||||||||||||||| |||||||| || |||||||| |
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| T |
37187988 |
tatcaatggcatcaagcaaatccttcatcatagctttacttcttgttgtgaccatgtcaagcatgagcctagaagctcgccatcttttacagacaacaca |
37187889 |
T |
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| Q |
128 |
accaagtttaccaaccattcccactttaccaaaaccaacaacattaccacctttaccttca |
188 |
Q |
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| T |
37187888 |
accaaatttgcctaacattcccaatttaccaaatccaactacattaccacctttgccttca |
37187828 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 44 - 125
Target Start/End: Complemental strand, 38704369 - 38704284
Alignment:
| Q |
44 |
caaatccttcatcacaactt----tacttctagttgtgacaatatcaaacatgagcctagaagctcgtcatcttttgcaaacaaca |
125 |
Q |
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| T |
38704369 |
caaatccttaatcacaacttaatttacttcttgttgtgacaatgtcaagcatgaacctagaagctcgtcatcttttgcaaacaaca |
38704284 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 84 - 167
Target Start/End: Original strand, 27102812 - 27102898
Alignment:
| Q |
84 |
tcaaacatgagcctagaagctcgtcatcttttgcaaacaac---acaaccaagtttaccaaccattcccactttaccaaaaccaaca |
167 |
Q |
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| T |
27102812 |
tcaaacatgaacctagaagctcgcaaccttttgcaaacaactacacaacccaatttgccaagcattcccactttaccaaaaccaaca |
27102898 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 84 - 167
Target Start/End: Original strand, 27096527 - 27096613
Alignment:
| Q |
84 |
tcaaacatgagcctagaagctcgtcatcttttgcaaaca---acacaaccaagtttaccaaccattcccactttaccaaaaccaaca |
167 |
Q |
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| T |
27096527 |
tcaaacatgagcctagaagctcgaaaccttttgcaaacaaccacacaacccaatttgccaaacattcccactttgccaaatccaaca |
27096613 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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