View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11557A_low_46 (Length: 384)
Name: NF11557A_low_46
Description: NF11557A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11557A_low_46 |
 | |
|
| [»] chr7 (1 HSPs) |
| |
|
Alignment Details
Target: chr7 (Bit Score: 271; Significance: 1e-151; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 6 - 384
Target Start/End: Complemental strand, 43476966 - 43476567
Alignment:
| Q |
6 |
agaagcagagagaagataaagagcaaataaggctagagttttggagaaatttccaaaatatatttggaaagttggacaagttatgtctatttagctaact |
105 |
Q |
| |
|
||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
43476966 |
agaagaagagtgaagataaagagcaaataaggctagagttttggagaaatttccaaaatatatttggaaagttggacaagttatgtctatttagccaact |
43476867 |
T |
|
| Q |
106 |
gtact-------ttcaactcatcaatcctgnnnnnnnn--------------gaaagaactcatcaatcctgttaacatcgttacttttaacaaacatgt |
184 |
Q |
| |
|
|||| |||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
43476866 |
ctactttcaagtttcaactcatcaatcctgttttttttttttttttttttttgaaagaactcatcaattctgttaacatcgttacttttaacaaacatgt |
43476767 |
T |
|
| Q |
185 |
aaaaatgaacaagatcatgggaagtggtcataagaaacaaagcaaaatcatgatcactagaacaaaaatcgataaatgaaatgacggtgaagaacttctc |
284 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43476766 |
aaaaatgaacaagatcatgggaagtggtcctaagaaacaaagcaaaatcatgatcactagaacaaaaatcgataaatgaaatgacggtgaagaacttctc |
43476667 |
T |
|
| Q |
285 |
aaaccaagctcatgtacttgtttcagactatggaaggctttcttcaacttacacacttcccctttattatgaggaaactttggtgttggtaccatataaa |
384 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
43476666 |
aaaccaagctcatgtacttgtttcagactatggaaggctttcttcaacttacacacttcccctttattatgaggaaactttggtggaggtaccatataaa |
43476567 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 49 - 79
Target Start/End: Original strand, 12729146 - 12729176
Alignment:
| Q |
49 |
gagaaatttccaaaatatatttggaaagttg |
79 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
12729146 |
gagaaatttccaaaatatatttggaaagttg |
12729176 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000003; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 49 - 79
Target Start/End: Original strand, 23686030 - 23686060
Alignment:
| Q |
49 |
gagaaatttccaaaatatatttggaaagttg |
79 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
23686030 |
gagaaatttccaaaatatatttggaaagttg |
23686060 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 49 - 79
Target Start/End: Original strand, 24058267 - 24058297
Alignment:
| Q |
49 |
gagaaatttccaaaatatatttggaaagttg |
79 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
24058267 |
gagaaatttccaaaatatatttggaaagttg |
24058297 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 49 - 79
Target Start/End: Original strand, 52653529 - 52653559
Alignment:
| Q |
49 |
gagaaatttccaaaatatatttggaaagttg |
79 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
52653529 |
gagaaatttccaaaatatatttggaaagttg |
52653559 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 49 - 79
Target Start/End: Original strand, 49053560 - 49053590
Alignment:
| Q |
49 |
gagaaatttccaaaatatatttggaaagttg |
79 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
49053560 |
gagaaatttccaaaatatatttggaaagttg |
49053590 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 49 - 79
Target Start/End: Original strand, 49061140 - 49061170
Alignment:
| Q |
49 |
gagaaatttccaaaatatatttggaaagttg |
79 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
49061140 |
gagaaatttccaaaatatatttggaaagttg |
49061170 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 277 - 357
Target Start/End: Original strand, 9878413 - 9878494
Alignment:
| Q |
277 |
aacttctcaaaccaagctcatgta-cttgtttcagactatggaaggctttcttcaacttacacacttcccctttattatgag |
357 |
Q |
| |
|
||||||||||||||||||| | | ||||||||||||| | || | ||||| ||||||||||||||||||| |||||||| |
|
|
| T |
9878413 |
aacttctcaaaccaagctcgcggagcttgtttcagactgtataaaaccttctttaacttacacacttccccttgattatgag |
9878494 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University