View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11557A_low_463 (Length: 205)
Name: NF11557A_low_463
Description: NF11557A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11557A_low_463 |
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| [»] chr5 (5 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 205; Significance: 1e-112; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 1 - 205
Target Start/End: Complemental strand, 11731898 - 11731694
Alignment:
| Q |
1 |
gtgttgaagatcttatcacaggttggcgtcgtcatcttcacctcgtgtggaagccgagggttgttaatgtttttgtatggcaataaaatggtcctcagtt |
100 |
Q |
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| T |
11731898 |
gtgttgaagatcttatcacaggttggcgtcgtcatcttcacctcgtgtggaagccgagggttgttaatgtttttgtatggcaataaaatggtcctcagtt |
11731799 |
T |
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| Q |
101 |
tctttgctataaacatcgaatctggaatcccacacgaaagatccaaaccaaaatcaaacgaagctcgcagcattccttcttcaactttttctccctttga |
200 |
Q |
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| T |
11731798 |
tctttgctataaacatcgaatctggaatcccacacgaaagatccaaaccaaaatcaaacgaagctcgcagcattccttcttcaactttttctccctttga |
11731699 |
T |
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| Q |
201 |
atcta |
205 |
Q |
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||||| |
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| T |
11731698 |
atcta |
11731694 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 1 - 176
Target Start/End: Original strand, 11902304 - 11902479
Alignment:
| Q |
1 |
gtgttgaagatcttatcacaggttggcgtcgtcatcttcacctcgtgtggaagccgagggttgttaatgtttttgtatggcaataaaatggtcctcagtt |
100 |
Q |
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||||||||||||||||| || |||| || ||||||||||||||||||||||| |||||||||||| || |||| ||||| | |||||| ||||||| |
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| T |
11902304 |
gtgttgaagatcttatcgcatgttgatgttgtcatcttcacctcgtgtggaaggcgagggttgttagtg---ctgtacggcaaaagaatggttctcagtt |
11902400 |
T |
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| Q |
101 |
tctttgctata---aacatcgaatctggaatcccacacgaaagatccaaaccaaaatcaaacgaagctcgcagcattcc |
176 |
Q |
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| T |
11902401 |
tctttgctttatcgaacaacaagtctgggatcccacatgacagatccaaagcaaaatcaaatgaagctcgcaacattcc |
11902479 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 62; E-Value: 5e-27
Query Start/End: Original strand, 1 - 171
Target Start/End: Complemental strand, 11828115 - 11827945
Alignment:
| Q |
1 |
gtgttgaagatcttatcacaggttggcgtcgtcatcttcacctcgtgtggaagccgagggttgttaatgtttttgtatggcaataaaatggtcctcagtt |
100 |
Q |
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|||| ||||||||||||||| |||| ||| |||||||| |||||||| ||||| ||||||||||||||| ||||||||||| | ||||||||| |||| |
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| T |
11828115 |
gtgtcgaagatcttatcacaagttgacgttgtcatctttacctcgtgcggaagacgagggttgttaatg---ttgtatggcaaaagaatggtccttagtt |
11828019 |
T |
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| Q |
101 |
tctttgctat---aaacatcgaatctggaatcccacacgaaagatccaaaccaaaatcaaacgaagctcgcagc |
171 |
Q |
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| T |
11828018 |
tctttgctgtctgaaacaccgaatcagggatctcacatgaaagatctaaagcaaaattgaacgaaactcgcagc |
11827945 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 1 - 181
Target Start/End: Complemental strand, 11860250 - 11860070
Alignment:
| Q |
1 |
gtgttgaagatcttatcacaggttggcgtcgtcatcttcacctcgtgtggaagccgagggttgttaatgtttttgtatggcaataaaatggtcctcagtt |
100 |
Q |
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|||| ||||||||||||||| |||| || |||| ||| ||||||| ||||||||||||||||||||| ||||||||||| | || |||||| |||| |
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| T |
11860250 |
gtgtcgaagatcttatcacaagttgatgttgtcacctttacctcgtacggaagccgagggttgttaatg---ttgtatggcaaaagaaaggtccttagtt |
11860154 |
T |
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| Q |
101 |
tctttgctat---aaacatcgaatctggaatcccacacgaaagatccaaaccaaaatcaaacgaagctcgcagcattccttctt |
181 |
Q |
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| T |
11860153 |
tctttgctttctgaaacaccaaatcagggatctcacatgaaagatctaaagcaaaatcgaacgaaactcgcagcattccatctt |
11860070 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 176
Target Start/End: Complemental strand, 12039018 - 12038843
Alignment:
| Q |
1 |
gtgttgaagatcttatcacaggttggcgtcgtcatcttcacctcgtgtggaagccgagggttgttaatgtttttgtatggcaataaaatggtcctcagtt |
100 |
Q |
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||||| ||||||||||||||||||| || ||||||| ||||||| |||||||||||||||| | || ||||||||||| | |||||||||||||| |
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| T |
12039018 |
gtgttaaagatcttatcacaggttgatgttgtcatctgtacctcgtcaggaagccgagggttgtcagtg---ttgtatggcaaaagaatggtcctcagtt |
12038922 |
T |
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| Q |
101 |
tctttgctat---aaacatcgaatctggaatcccacacgaaagatccaaaccaaaatcaaacgaagctcgcagcattcc |
176 |
Q |
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| T |
12038921 |
ttttagctttctcaaacacacaatctgggatcccacacaacaaatctaaagcataatcaaacgaaactcgtagcattcc |
12038843 |
T |
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