View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11557A_low_464 (Length: 205)
Name: NF11557A_low_464
Description: NF11557A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11557A_low_464 |
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Alignment Details
Target: chr2 (Bit Score: 169; Significance: 8e-91; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 169; E-Value: 8e-91
Query Start/End: Original strand, 17 - 185
Target Start/End: Original strand, 33430392 - 33430560
Alignment:
| Q |
17 |
atatatatgtgtgtcttaagatcatcacatatatcaaacacatcacacacaaaatataagacatttaaactgcataagtgatcgtcaatcatttaaactt |
116 |
Q |
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| T |
33430392 |
atatatatgtgtgtcttaagatcatcacatatatcaaacacatcacacacaaaatataagacatttaaactgcataagtgatcgtcaatcatttaaactt |
33430491 |
T |
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| Q |
117 |
cactatcattaagcgatggagaagaaatcaatagctggcttgtgcttactcttcctcgttctctttgtt |
185 |
Q |
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| T |
33430492 |
cactatcattaagcgatggagaagaaatcaatagctggcttgtgcttactcttcctcgttctctttgtt |
33430560 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 120 - 185
Target Start/End: Original strand, 33435274 - 33435339
Alignment:
| Q |
120 |
tatcattaagcgatggagaagaaatcaatagctggcttgtgcttactcttcctcgttctctttgtt |
185 |
Q |
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| T |
33435274 |
tatcactaagctatggagaagaaaacactagcaggcttatgcttcctcttcctcgttctctttgtt |
33435339 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 126 - 185
Target Start/End: Complemental strand, 11127657 - 11127598
Alignment:
| Q |
126 |
taagcgatggagaagaaatcaatagctggcttgtgcttactcttcctcgttctctttgtt |
185 |
Q |
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| T |
11127657 |
taagccatggaaaagaaatcactagttgtcttgtgcttcctcttcctcgttctctttgtt |
11127598 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 132 - 185
Target Start/End: Original strand, 11381590 - 11381641
Alignment:
| Q |
132 |
atggagaagaaatcaatagctggcttgtgcttactcttcctcgttctctttgtt |
185 |
Q |
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| T |
11381590 |
atggagaagaaatcactagcaggcttgt--ttcctcttcctcgttctctttgtt |
11381641 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 126 - 183
Target Start/End: Complemental strand, 11122304 - 11122247
Alignment:
| Q |
126 |
taagcgatggagaagaaatcaatagctggcttgtgcttactcttcctcgttctctttg |
183 |
Q |
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| T |
11122304 |
taagccatggagaagaaatcactagttggcgtgtgtatcctcttcctcgttctctttg |
11122247 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 132 - 181
Target Start/End: Original strand, 11384215 - 11384264
Alignment:
| Q |
132 |
atggagaagaaatcaatagctggcttgtgcttactcttcctcgttctctt |
181 |
Q |
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| T |
11384215 |
atggagaagaaatcactaccaggcttgtgtttcctcttcctcgttctctt |
11384264 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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