View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11557A_low_469 (Length: 204)
Name: NF11557A_low_469
Description: NF11557A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11557A_low_469 |
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Alignment Details
Target: chr1 (Bit Score: 109; Significance: 5e-55; HSPs: 8)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 109; E-Value: 5e-55
Query Start/End: Original strand, 45 - 189
Target Start/End: Complemental strand, 13244251 - 13244107
Alignment:
| Q |
45 |
tttccctctttcccaatccttctttcattagttcttttagcaggcaataacgagattcatctacatcttcatttcctttgtactcagttatacatttgtc |
144 |
Q |
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| T |
13244251 |
tttccccctttcccaatctttccttcattagttcttttagcaggcaataacgagattcatctacatcttcatttcctttgtaatcagttatacatttctc |
13244152 |
T |
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| Q |
145 |
caagaagtggtgaagattttcttttgctgccttgcccttcatctc |
189 |
Q |
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| T |
13244151 |
caagaattggtgaagattttctctagctgccttgcccttcttctc |
13244107 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 45 - 114
Target Start/End: Complemental strand, 12963644 - 12963575
Alignment:
| Q |
45 |
tttccctctttcccaatccttctttcattagttcttttagcaggcaataacgagattcatctacatcttc |
114 |
Q |
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| T |
12963644 |
tttccccctttcccaatccttccttcattagatcttttagcaggcaagaatgagattcatccacgtcttc |
12963575 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 3 - 46
Target Start/End: Complemental strand, 13080831 - 13080788
Alignment:
| Q |
3 |
ttcacatatggctccatgaaggtaaacaagcttatcaagctctt |
46 |
Q |
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| T |
13080831 |
ttcacatatggctccatgaaggtaaactagcttatcaagctctt |
13080788 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 13244489 - 13244450
Alignment:
| Q |
1 |
gtttcacatatggctccatgaaggtaaacaagcttatcaa |
40 |
Q |
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| T |
13244489 |
gtttcacatatggctccatgaaggtaaacaagcttatcaa |
13244450 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 52 - 119
Target Start/End: Complemental strand, 19278894 - 19278827
Alignment:
| Q |
52 |
ctttcccaatccttctttcattagttcttttagcaggcaataacgagattcatctacatcttcatttc |
119 |
Q |
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| T |
19278894 |
ctttcccaatctttccttcattagttcttttaccaggcaataatgagattcatccgcgtcttcatttc |
19278827 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 3 - 48
Target Start/End: Complemental strand, 19279134 - 19279089
Alignment:
| Q |
3 |
ttcacatatggctccatgaaggtaaacaagcttatcaagctctttc |
48 |
Q |
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| T |
19279134 |
ttcacatatagctccatgaagataaactagcttatcaagctctttc |
19279089 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 110 - 189
Target Start/End: Complemental strand, 19278809 - 19278730
Alignment:
| Q |
110 |
tcttcatttcctttgtactcagttatacatttgtccaagaagtggtgaagattttcttttgctgccttgcccttcatctc |
189 |
Q |
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| T |
19278809 |
tcttcatcacctttgtaataagatatacatttgttcaagaattcgtgaagattttctttagctaccgtgcccttcttctc |
19278730 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 3 - 47
Target Start/End: Complemental strand, 12963841 - 12963797
Alignment:
| Q |
3 |
ttcacatatggctccatgaaggtaaacaagcttatcaagctcttt |
47 |
Q |
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| T |
12963841 |
ttcacaaatagctccatgaagataaacaagcttatcaagcccttt |
12963797 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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