View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11557A_low_472 (Length: 203)
Name: NF11557A_low_472
Description: NF11557A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11557A_low_472 |
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Alignment Details
Target: chr3 (Bit Score: 44; Significance: 3e-16; HSPs: 7)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 4 - 51
Target Start/End: Original strand, 5696465 - 5696512
Alignment:
| Q |
4 |
tcaagactttacaaagattcttgttgcaagaagaggtggagaaataat |
51 |
Q |
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| T |
5696465 |
tcaagactttacaaagattcttgttgcaagaagaggcggagaaataat |
5696512 |
T |
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Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 10 - 60
Target Start/End: Original strand, 5670783 - 5670833
Alignment:
| Q |
10 |
ctttacaaagattcttgttgcaagaagaggtggagaaataataaagtagat |
60 |
Q |
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| T |
5670783 |
ctttacaatgattattgttgcaagaagaggaggagaaataataaagtagat |
5670833 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 10 - 60
Target Start/End: Original strand, 5680276 - 5680326
Alignment:
| Q |
10 |
ctttacaaagattcttgttgcaagaagaggtggagaaataataaagtagat |
60 |
Q |
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| T |
5680276 |
ctttacaatgattattgttgcaagaagaggaggagaaataataaagtagat |
5680326 |
T |
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Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 139 - 185
Target Start/End: Original strand, 5795767 - 5795813
Alignment:
| Q |
139 |
cttataagaaaacatacaatagtataacctttggtgactaatataag |
185 |
Q |
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| T |
5795767 |
cttataagcaaacatacaataatataacctttggtgactaatataag |
5795813 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 10 - 60
Target Start/End: Original strand, 5694428 - 5694478
Alignment:
| Q |
10 |
ctttacaaagattcttgttgcaagaagaggtggagaaataataaagtagat |
60 |
Q |
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| T |
5694428 |
ctttacaatgattattgttgcaagaagaggaggagaaataatcaagtagat |
5694478 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 19 - 60
Target Start/End: Original strand, 5736864 - 5736905
Alignment:
| Q |
19 |
gattcttgttgcaagaagaggtggagaaataataaagtagat |
60 |
Q |
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| T |
5736864 |
gattcttgttgcaagaaaaggaggagaaataataaagtagat |
5736905 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 19 - 60
Target Start/End: Original strand, 5773976 - 5774017
Alignment:
| Q |
19 |
gattcttgttgcaagaagaggtggagaaataataaagtagat |
60 |
Q |
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| T |
5773976 |
gattcttgttgcaagaaaaggaggagaaataataaagtagat |
5774017 |
T |
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