View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11557A_low_473 (Length: 203)
Name: NF11557A_low_473
Description: NF11557A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11557A_low_473 |
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Alignment Details
Target: chr6 (Bit Score: 134; Significance: 6e-70; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 134; E-Value: 6e-70
Query Start/End: Original strand, 1 - 199
Target Start/End: Complemental strand, 3078688 - 3078491
Alignment:
| Q |
1 |
ggtttcagtaaaatgtttgacattatttgttgtttttgaagattgaacaaattttcataataaaaattaattagtgtgtatgtccgtgcatcgcaacgac |
100 |
Q |
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| T |
3078688 |
ggtttcagtaaaatgtttgacattatttggtgtctttgaagattgaacaaattttcattatataaaataattagtgtgtatacccgtgcatcgcaccgac |
3078589 |
T |
|
| Q |
101 |
aaattgttttaaattaaatnnnnnnngttccttttcctaaagtaaaatttactaacatagtcaaaggacaagatgtgctaatattataaacgataataa |
199 |
Q |
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| T |
3078588 |
aaatc-ttttaaattaaataaaaaaagttccttttcctaaagtaaaatttactaacatagtcaaaggacaagatgtgctaatattataaacgataataa |
3078491 |
T |
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