View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11557A_low_475 (Length: 202)
Name: NF11557A_low_475
Description: NF11557A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11557A_low_475 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 153; Significance: 3e-81; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 20 - 188
Target Start/End: Original strand, 6359103 - 6359271
Alignment:
| Q |
20 |
gaagtcagatccttgtgtatatgcaaattatcaagaagctatatccatatataaaaggattgagaaactgcaaatcaattgatgcaaacacgagagacat |
119 |
Q |
| |
|
||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
6359103 |
gaagtcagatccttgagtatatgcagattatcaagaagctatatccatatataaaaggattgagaaactgcaaatcaattgatgcaaacacgagagacgt |
6359202 |
T |
|
| Q |
120 |
tttgaatttaagctcgtccttgtaattctctctatctactactgttattatttcgttattaaatatatt |
188 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
6359203 |
tttgaatttaagctcgtccttgtaattctctctatttactactgttattatttcgttattaaatatatt |
6359271 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 20 - 93
Target Start/End: Complemental strand, 32857358 - 32857285
Alignment:
| Q |
20 |
gaagtcagatccttgtgtatatgcaaattatcaagaagctatatccatatataaaaggattgagaaactgcaaa |
93 |
Q |
| |
|
||||||| ||||||| |||||| | ||| ||| |||||||| ||||| |||||| ||||||||||||||||| |
|
|
| T |
32857358 |
gaagtcaaatccttgactatatgtagattctcatgaagctatttccatccataaaatgattgagaaactgcaaa |
32857285 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University