View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11557A_low_59 (Length: 373)
Name: NF11557A_low_59
Description: NF11557A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11557A_low_59 |
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| [»] scaffold1155 (1 HSPs) |
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| [»] scaffold0345 (1 HSPs) |
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| [»] scaffold0105 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 301; Significance: 1e-169; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 52 - 356
Target Start/End: Original strand, 29021765 - 29022069
Alignment:
| Q |
52 |
aagagatgagtgctattgagggtttcaaggtggtaacaagtgagagaggtcaaagtagtaatgtttttactgaaagctcgcaaaccatctgcgggaaaga |
151 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
29021765 |
aagagatgagtgctattgagggtttcaaggtggtaacaagtgagagaggtcaaagtagtaatgtttttgctgaaagctcgcaaaccatctgcgggaaaga |
29021864 |
T |
|
| Q |
152 |
tatcttggtcggagaaattgagagatgtgaggttcaaagggaagcgagagatttgaaagagaagcgagtcgaggtcaccatagtagcaccttaggtcgag |
251 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29021865 |
tatcttggtcggagaaattgagagatgtgaggttcaaagggaagcgagagatttgaaagagaagcgagtcgaggtcaccatagtagcaccttaggtcgag |
29021964 |
T |
|
| Q |
252 |
agagttgaggttggagaatctagggaataagtcacaaaggaaaggtggtgttggatcatatatagtgagagagaatttgagacagttggagatagagaga |
351 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29021965 |
agagttgaggttggagaatctagggaataagtcacaaaggaaaggtggtgttggatcatatatagtgagagagaatttgagacagttggagatagagaga |
29022064 |
T |
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| Q |
352 |
aactg |
356 |
Q |
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||||| |
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| T |
29022065 |
aactg |
29022069 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 143; E-Value: 5e-75
Query Start/End: Original strand, 94 - 356
Target Start/End: Complemental strand, 28661240 - 28660978
Alignment:
| Q |
94 |
agagaggtcaaagtagtaatgtttttactgaaagctcgcaaaccatctgcgggaaagatatcttggtcggagaaattgagagatgtgaggttcaaaggga |
193 |
Q |
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|||||||||||||| |||||||||| |||||||||| |||||||| |||||||||||||| || || | ||||||||||||||||||||||||| |||| |
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| T |
28661240 |
agagaggtcaaagttgtaatgttttggctgaaagctcccaaaccatgtgcgggaaagatatttttgttgcagaaattgagagatgtgaggttcaacggga |
28661141 |
T |
|
| Q |
194 |
agcgagagatttgaaagagaagcgagtcgaggtcaccatagtagcaccttaggtcgagagagttgaggttggagaatctagggaataagtcacaaaggaa |
293 |
Q |
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||| |||||||||||| ||||| ||||| |||| ||| ||||| || |||||||||||||||| |||||||||||||||||||||| ||| ||||| |
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| T |
28661140 |
agctagagatttgaaatagaagtgagtcaaggttaccgtagtaacatgttaggtcgagagagttcaggttggagaatctagggaatagactacagaggaa |
28661041 |
T |
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| Q |
294 |
aggtggtgttggatcatatatagtgagagagaatttgagacagttggagatagagagaaactg |
356 |
Q |
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| T |
28661040 |
gggtggtgttggatcatatatagtgagcgagaatttgagaccgttggtgatagagaggaactg |
28660978 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 46 - 118
Target Start/End: Complemental strand, 28695617 - 28695545
Alignment:
| Q |
46 |
atgaagaagagatgagtgctattgagggtttcaaggtggtaacaagtgagagaggtcaaagtagtaatgtttt |
118 |
Q |
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||||||||||||| |||||||| ||| ||| |||||||| |||||||||||||||||| ||| |||||||||| |
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| T |
28695617 |
atgaagaagagatcagtgctatggagagttgcaaggtgggaacaagtgagagaggtcatagttgtaatgtttt |
28695545 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 29021999 - 29021959
Alignment:
| Q |
1 |
gtgacttattccctagattctccgtgctcaactctctcgac |
41 |
Q |
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| T |
29021999 |
gtgacttattccctagattctccaacctcaactctctcgac |
29021959 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 86 - 148
Target Start/End: Complemental strand, 21833331 - 21833269
Alignment:
| Q |
86 |
aacaagtgagagaggtcaaagtagtaatgtttttactgaaagctcgcaaaccatctgcgggaa |
148 |
Q |
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||||||||||||||||||||||||||||||||| ||| ||||||| ||||||||||||| |
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| T |
21833331 |
aacaagtgagagaggtcaaagtagtaatgttttgtgcaaaaactcgcaacccatctgcgggaa |
21833269 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 86 - 148
Target Start/End: Original strand, 553761 - 553823
Alignment:
| Q |
86 |
aacaagtgagagaggtcaaagtagtaatgtttttactgaaagctcgcaaaccatctgcgggaa |
148 |
Q |
| |
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|||| ||||||||||||||||| |||||||||| |||||||||||| |||| |||||||| |
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| T |
553761 |
aacaggtgagagaggtcaaagttgtaatgttttgggagaaagctcgcaacccatttgcgggaa |
553823 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 86 - 148
Target Start/End: Complemental strand, 19467485 - 19467423
Alignment:
| Q |
86 |
aacaagtgagagaggtcaaagtagtaatgtttttactgaaagctcgcaaaccatctgcgggaa |
148 |
Q |
| |
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|||||||||||||||||||||| ||||| |||| | ||||| ||||||| |||| |||||||| |
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| T |
19467485 |
aacaagtgagagaggtcaaagttgtaatattttgagtgaaaactcgcaacccatttgcgggaa |
19467423 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1155 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold1155
Description:
Target: scaffold1155; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 128 - 205
Target Start/End: Complemental strand, 1898 - 1821
Alignment:
| Q |
128 |
ctcgcaaaccatctgcgggaaagatatcttggtcggagaaattgagagatgtgaggttcaaagggaagcgagagattt |
205 |
Q |
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||||||| ||||||||||||| || ||||| ||||| |||||| |||||||||||||| ||||| |||||||||| |
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| T |
1898 |
ctcgcaacccatctgcgggaattatgggttggtaggagagattgagtgatgtgaggttcaatgggaaacgagagattt |
1821 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0345 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold0345
Description:
Target: scaffold0345; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 128 - 205
Target Start/End: Original strand, 8318 - 8395
Alignment:
| Q |
128 |
ctcgcaaaccatctgcgggaaagatatcttggtcggagaaattgagagatgtgaggttcaaagggaagcgagagattt |
205 |
Q |
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||||||| ||||||||||||| || ||||| ||||| |||||| |||||||||||||| ||||| |||||||||| |
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| T |
8318 |
ctcgcaacccatctgcgggaattatgggttggtaggagagattgagtgatgtgaggttcaatgggaaacgagagattt |
8395 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0105 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold0105
Description:
Target: scaffold0105; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 128 - 205
Target Start/End: Complemental strand, 30661 - 30584
Alignment:
| Q |
128 |
ctcgcaaaccatctgcgggaaagatatcttggtcggagaaattgagagatgtgaggttcaaagggaagcgagagattt |
205 |
Q |
| |
|
||||||| ||||||||||||| || ||||| ||||| |||||| |||||||||||||| ||||| |||||||||| |
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| T |
30661 |
ctcgcaacccatctgcgggaattatgggttggtaggagagattgagtgatgtgaggttcaatgggaaacgagagattt |
30584 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 86 - 118
Target Start/End: Original strand, 32151970 - 32152002
Alignment:
| Q |
86 |
aacaagtgagagaggtcaaagtagtaatgtttt |
118 |
Q |
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|||||||||||||||||||||| |||||||||| |
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| T |
32151970 |
aacaagtgagagaggtcaaagttgtaatgtttt |
32152002 |
T |
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