View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11557A_low_64 (Length: 369)
Name: NF11557A_low_64
Description: NF11557A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11557A_low_64 |
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Alignment Details
Target: chr3 (Bit Score: 338; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 14 - 363
Target Start/End: Complemental strand, 51873981 - 51873632
Alignment:
| Q |
14 |
tttggagttggccatctttgaagttcattttgatcttgaacttcatcatgaggagggtcatttatgagtagtttgggatcagaagttatgaggttggttt |
113 |
Q |
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| T |
51873981 |
tttggagttggccatctttgaagttcattttgatcttgaacttcatcatgaggagggtcatttatgagtagtttaggatcagaagttatgaggttggttt |
51873882 |
T |
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| Q |
114 |
gtgtgggacagagaaatggggatggcttaggtttacacatatctcactagcaagtagttttggatatgtacaaaggatagaatatacaagagctaccact |
213 |
Q |
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| T |
51873881 |
gtgtgggacagagaaatggggatggcttaggtttacacatatctcactagcaagtagttttggatatgtacaaaggatagaatatacaagagctaccact |
51873782 |
T |
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| Q |
214 |
gctcttgcttctagcttaggcttagtgatcgtggatggattgtgtttgaagctgtttgagaagatgtaagaggtttgtgtattttgtatgggaggaagat |
313 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51873781 |
gctcttgcttctagcttaggcttagtgatcgtggatggactgtgtttgaagctgtttgagaagatgtaagaggtttgtgtattttgtatgggaggaagat |
51873682 |
T |
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| Q |
314 |
gatgaaggtgagtgtgtgtttttatgcatgaagaaaggtttgggccctac |
363 |
Q |
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| T |
51873681 |
gatgaaggtgagtgtgtgtttttatgcatgaagaaaggcttgggccctac |
51873632 |
T |
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