View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11557A_low_65 (Length: 368)
Name: NF11557A_low_65
Description: NF11557A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11557A_low_65 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 297; Significance: 1e-167; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 1 - 368
Target Start/End: Original strand, 16634984 - 16635354
Alignment:
| Q |
1 |
gttggttgttttcaccaacttgaaaaaacgcatttagggacataaactttgaaagcagaagttttatcctgtgagccaaactctgtttaaaaccttctaa |
100 |
Q |
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| T |
16634984 |
gttggttgttttcaccaacttgaaaa-acgcatttagagacataaactttgaaagcagaagttttatcctgtgagccaaactccgtttaaaaccttctaa |
16635082 |
T |
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| Q |
101 |
ctgggattagaaatcactagcaacattatgtggaaatttatttaaaatttcaatctacttttaaggatatgtttgagccgctaaaaaataataacggagt |
200 |
Q |
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||||||||||||||||||||||||||||| |||| ||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||| |
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| T |
16635083 |
ctgggattagaaatcactagcaacattatatggatattcatttaaaatttcaatctacttctaaggatatgtttgagccgctaaaaaataataatagagt |
16635182 |
T |
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| Q |
201 |
gaactatgaaaacgtgttattc-----tgtcttgtgtaatgttatcatttacattttagcagattaaatattccttaaaagaagtgacacaatatattta |
295 |
Q |
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|||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
16635183 |
gaac-atgaaaacgtgttattctgtcttgtcttgtgtaatgttatcatttacattttagcagattaaatataccttaaaagaagtgacacaatatattta |
16635281 |
T |
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| Q |
296 |
tttaattccacggcaaatataaggagcacaacaaaaaataatttgcagtgatatataaatggtttatcacctc |
368 |
Q |
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||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16635282 |
tttaattccacggaaaatataaggagcacaacaaaaaataatttgcagtgatatataaatggtttatcacctc |
16635354 |
T |
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