View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11557A_low_66 (Length: 365)
Name: NF11557A_low_66
Description: NF11557A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11557A_low_66 |
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Alignment Details
Target: chr2 (Bit Score: 287; Significance: 1e-161; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 7 - 353
Target Start/End: Complemental strand, 20487240 - 20486894
Alignment:
| Q |
7 |
taaagttcacgcttccattgacaaatttgacacgtccagtgggataatatgaccattaccattgaaaaattatcttcccccagtcaggacaatgtctatt |
106 |
Q |
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| T |
20487240 |
taaaattcacgcttccattgacaaatttgacatgtccagtgggacaatatgaccattaccattgaaaaattatcttccctcagtcaggacaatgtctatt |
20487141 |
T |
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| Q |
107 |
gtatgcattggaggtctggaaagagtctcaacaatatgaaacaaccgccatcttcagcaactagaaagtcagtgcagcgttgacttaaggatcattcgca |
206 |
Q |
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| T |
20487140 |
gtatgcattggaggtctggaaagagtctcaacaatatgaaacaaccaccatcttcagcaaccagaaagtcagtgcagccttgacttaaggatctttcgca |
20487041 |
T |
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| Q |
207 |
aacgttgagagtgccaacatatatggatccttctagcatttcaaaggtataacttgtcaaaacatcatagaatttattagtaatgacaacgtctttcatt |
306 |
Q |
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| T |
20487040 |
aacgttgggagtgccaacatatatggatccttctagcgtttcagaggtatagcctgtcaaaacatcatagaatttattagtaatgacaacgtctttcatt |
20486941 |
T |
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| Q |
307 |
agacaatatattaacatgagattaatgacagtctttcataccatatt |
353 |
Q |
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| T |
20486940 |
agacaatatattaacatgggattaatgacaatctttcataccatatt |
20486894 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 284 - 324
Target Start/End: Original strand, 21770689 - 21770729
Alignment:
| Q |
284 |
tagtaatgacaacgtctttcattagacaatatattaacatg |
324 |
Q |
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| T |
21770689 |
tagtaatgacaacgtctttcattagacatcatattgacatg |
21770729 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 117 - 177
Target Start/End: Original strand, 9510135 - 9510195
Alignment:
| Q |
117 |
gaggtctggaaagagtctcaacaatatgaaacaaccgccatcttcagcaactagaaagtca |
177 |
Q |
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| T |
9510135 |
gaggtttggaaagagtctcaacagtatgaatcaaccttcatcatcaacaactagaaggtca |
9510195 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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