View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11557A_low_69 (Length: 362)
Name: NF11557A_low_69
Description: NF11557A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11557A_low_69 |
 | |
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| [»] scaffold0140 (1 HSPs) |
| | |
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| [»] chr4 (5 HSPs) |
| |
|
| [»] chr1 (5 HSPs) |
| |
|
| [»] scaffold0129 (2 HSPs) |
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Alignment Details
Target: scaffold0140 (Bit Score: 315; Significance: 1e-177; HSPs: 1)
Name: scaffold0140
Description:
Target: scaffold0140; HSP #1
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 18 - 359
Target Start/End: Original strand, 35835 - 36176
Alignment:
| Q |
18 |
catctctcacccactaccttcttcatctttc-tgccaaatttttcatctcacccaatgtcttctcattccattaccaattcatcttcaattgaaatgcct |
116 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35835 |
catctctcacccactaccttcttcatctttcttgccaaa-ttttcatctcatccaatgtcttctcattccattaccaattcatcttcaattgaaatgcct |
35933 |
T |
|
| Q |
117 |
atttgtggttgcaacaaaacaatgaagatgtttatctcaaattcaattgacaaccctaaaaggagatactggaaatgcccaacatttatggtgagttatt |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35934 |
atttgtggttgcaacaaaacaatgaagatgtttatctcaaattcaattgacaaccctaaaaggagatactggaaatgcccaacatttatggtgagttatt |
36033 |
T |
|
| Q |
217 |
ttgtataatactttgtttgttgggtattttcgcacactttaatgtaattaaaagatgtgtatggttgattttgtttttaggatcctaatagttgcaagtt |
316 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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|
| T |
36034 |
ttgtataatactttgtttgttgggtattttggcacactttaatgtaattaaaagatgtgtatggttgattttgtttttagggtcctaatagttgcaagtt |
36133 |
T |
|
| Q |
317 |
gttcatatgggatgatgaaattgatggacatcctccatatgtt |
359 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36134 |
gttcatatgggatgatgaaattgatggacatcctccatatgtt |
36176 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 238; Significance: 1e-132; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 17 - 362
Target Start/End: Complemental strand, 13508172 - 13507827
Alignment:
| Q |
17 |
tcatctctcacccactaccttcttcatctttctgccaaatttttcatctcacccaatgtcttctcattccattaccaattcatcttcaattgaaatgcct |
116 |
Q |
| |
|
|||||||||||||| | ||||||||||||||||| ||| || ||||||||||||| ||||||||||||||||||| ||||||| ||||||| | ||||| |
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|
| T |
13508172 |
tcatctctcacccaattccttcttcatctttctgtcaatttcttcatctcacccagtgtcttctcattccattactaattcatattcaattaagttgcct |
13508073 |
T |
|
| Q |
117 |
atttgtggttgcaacaaaacaatgaagatgtttatctcaaattcaattgacaaccctaaaaggagatactggaaatgcccaacatttatggtgagttatt |
216 |
Q |
| |
|
|| ||||||||||||||| ||||||||||||||||| | |||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
13508072 |
atatgtggttgcaacaaagcaatgaagatgtttatccccaattcaattgacaaccctaaaatgagataatggaaatgcccaacatttatggtgagttatt |
13507973 |
T |
|
| Q |
217 |
ttgtataatactttgtttgttgggtattttcgcacactttaatgtaattaaaagatgtgtatggttgattttgtttttaggatcctaatagttgcaagtt |
316 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||| |||||| ||||||||| || | |||||||||||||||||||||| | |||||||||| ||||| |
|
|
| T |
13507972 |
ttgtataatactttgtttgttgtgtattttcgcacagtttaatataattaaaatatatatatggttgattttgtttttagggtgctaatagttgtaagtt |
13507873 |
T |
|
| Q |
317 |
gttcatatgggatgatgaaattgatggacatcctccatatgttcgt |
362 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
13507872 |
gttcatatgggatgatgaaattgatggacatcctctatatgttcgt |
13507827 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 17 - 362
Target Start/End: Original strand, 13507078 - 13507422
Alignment:
| Q |
17 |
tcatctctcacccactaccttcttcatctttctgccaaatttttcatctcacccaatgtcttctcattccattaccaattcatcttcaattgaaatgcct |
116 |
Q |
| |
|
|||||| ||||||| | ||||||||||||||| |||| || |||||||| ||||||||||||| |||||||||| ||||||||||||||||| ||||| |
|
|
| T |
13507078 |
tcatctgtcacccaattccttcttcatctttcaaccaatttcttcatctctcccaatgtcttcttattccattactaattcatcttcaattgag-tgcct |
13507176 |
T |
|
| Q |
117 |
atttgtggttgcaacaaaacaatgaagatgtttatctcaaattcaattgacaaccctaaaaggagatactggaaatgcccaacatttatggtgagttatt |
216 |
Q |
| |
|
|||||||||||||||||| ||||||| ||||||||||| |||| | |||||||||||||||| ||||||||||||| |||||||||||||| |||||||| |
|
|
| T |
13507177 |
atttgtggttgcaacaaagcaatgaatatgtttatctccaatttagttgacaaccctaaaagaagatactggaaatacccaacatttatggcgagttatt |
13507276 |
T |
|
| Q |
217 |
ttgtataatactttgtttgttgggtattttcgcacactttaatgtaattaaaagatgtgtatggttgattttgtttttaggatcctaatagttgcaagtt |
316 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||| |||||||||||||||| |||| |||||||||||||||| ||||| | |||||||||| ||||| |
|
|
| T |
13507277 |
ttgtataatactttgtttgttgtgtattttcgcacagtttaatgtaattaaaaaatgtatatggttgattttgttattagggtgctaatagttgtaagtt |
13507376 |
T |
|
| Q |
317 |
gttcatatgggatgatgaaattgatggacatcctccatatgttcgt |
362 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
13507377 |
gttcatatgggatgatgaaattgatggacatcctccgtatgttcgt |
13507422 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 72 - 174
Target Start/End: Original strand, 42225735 - 42225837
Alignment:
| Q |
72 |
atgtcttctcattccattaccaattcatcttcaattgaaatgcctatttgtggttgcaacaaaacaatgaagatgtttatctcaaattcaattgacaacc |
171 |
Q |
| |
|
|||||||||||||||||| | |||| |||||||||| || ||| ||| |||||||||||||||| |||| |||||| ||||| ||||||| ||| |||| |
|
|
| T |
42225735 |
atgtcttctcattccattgctaattgatcttcaatttaattgcttatatgtggttgcaacaaaatcatgaggatgttcatctccaattcaaatgaaaacc |
42225834 |
T |
|
| Q |
172 |
cta |
174 |
Q |
| |
|
||| |
|
|
| T |
42225835 |
cta |
42225837 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 112 - 201
Target Start/End: Original strand, 28427317 - 28427406
Alignment:
| Q |
112 |
tgcctatttgtggttgcaacaaaacaatgaagatgtttatctcaaattcaattgacaaccctaaaaggagatactggaaatgcccaacat |
201 |
Q |
| |
|
||||| ||||||||||||||||||| || |||||| || || ||||||||||| |||||||||| |||||| |||||||||||||||| |
|
|
| T |
28427317 |
tgcctttttgtggttgcaacaaaaccgcgaggatgttcatatccaattcaattgaaaaccctaaaaagagatattggaaatgcccaacat |
28427406 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 301 - 358
Target Start/End: Original strand, 28427505 - 28427562
Alignment:
| Q |
301 |
ctaatagttgcaagttgttcatatgggatgatgaaattgatggacatcctccatatgt |
358 |
Q |
| |
|
|||||||||| ||||||| |||||| |||||||||||||| |||||||| |||||||| |
|
|
| T |
28427505 |
ctaatagttgtaagttgtacatatgtgatgatgaaattgaaggacatcccccatatgt |
28427562 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 226; Significance: 1e-124; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 54 - 362
Target Start/End: Original strand, 23573177 - 23573486
Alignment:
| Q |
54 |
aatttttcatctcacccaatgtcttctcattccattaccaattcatcttcaattgaaatgcctatttgtggttgcaacaaaacaatgaagatgtttatct |
153 |
Q |
| |
|
|||||||||| ||||||||||||| |||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23573177 |
aatttttcatatcacccaatgtctactcattccatgaccaattcatcttcaactgaaatgcctatttgtggttgcaacaaaacaatgaagatgtttatct |
23573276 |
T |
|
| Q |
154 |
caaattcaattgacaaccctaaaaggagatactggaaatgcccaacatttatggtgagttattttgtataatactttgtttgttgggtattttcgcacac |
253 |
Q |
| |
|
||||||||| ||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||| | |
|
|
| T |
23573277 |
caaattcaactgagaatcctaaaaggagatactggaaatgcccaacatttatggtgagttattttgtataatactttgattgttgggtaatttcgcaccc |
23573376 |
T |
|
| Q |
254 |
tttaatgtaattaaaagatgtgtatggttgattttg-tttttaggatcctaatagttgcaagttgttcatatgggatgatgaaattgatggacatcctcc |
352 |
Q |
| |
|
|||||||||| ||| ||||| |||||| |||||| |||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
23573377 |
tttaatgtaaaataaaaatgtggatggtttattttgttttttagggttctaatagttgcaagttgttcatatgggatgatgaaattgatggacatcctgc |
23573476 |
T |
|
| Q |
353 |
atatgttcgt |
362 |
Q |
| |
|
|||||||||| |
|
|
| T |
23573477 |
atatgttcgt |
23573486 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 305 - 362
Target Start/End: Complemental strand, 31815195 - 31815138
Alignment:
| Q |
305 |
tagttgcaagttgttcatatgggatgatgaaattgatggacatcctccatatgttcgt |
362 |
Q |
| |
|
|||||| ||||||| ||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
31815195 |
tagttgtaagttgtacatatgggatgatgaaattgaaggacatcctccatatgttcgt |
31815138 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 114 - 213
Target Start/End: Complemental strand, 31815380 - 31815281
Alignment:
| Q |
114 |
cctatttgtggttgcaacaaaacaatgaagatgtttatctcaaattcaattgacaaccctaaaaggagatactggaaatgcccaacatttatggtgagtt |
213 |
Q |
| |
|
||||| |||||||||||||||| |||| ||||| || || |||||| ||| |||||||||||||||||||||||||||||||| | |||| |||||| |
|
|
| T |
31815380 |
cctatgtgtggttgcaacaaaatcatgagaatgttcatatccaattcacatgaaaaccctaaaaggagatactggaaatgcccaacctatatgatgagtt |
31815281 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 70 - 175
Target Start/End: Complemental strand, 7384554 - 7384449
Alignment:
| Q |
70 |
caatgtcttctcattccattaccaattcatcttcaattgaaatgcctatttgtggttgcaacaaaacaatgaagatgtttatctcaaattcaattgacaa |
169 |
Q |
| |
|
||||||||||||||| |||| | ||||||||||||||||| ||||||| |||| |||||||||| |||| |||||| ||||| ||||||| | | || |
|
|
| T |
7384554 |
caatgtcttctcatttcattgctaattcatcttcaattgagttgcctatatgtgcgtgcaacaaaattatgaggatgttcatctccaattcaaataaaaa |
7384455 |
T |
|
| Q |
170 |
ccctaa |
175 |
Q |
| |
|
|||||| |
|
|
| T |
7384454 |
ccctaa |
7384449 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 70 - 172
Target Start/End: Complemental strand, 9419464 - 9419362
Alignment:
| Q |
70 |
caatgtcttctcattccattaccaattcatcttcaattgaaatgcctatttgtggttgcaacaaaacaatgaagatgtttatctcaaattcaattgacaa |
169 |
Q |
| |
|
|||||||||||||||||||| | | ||||| |||||||| | ||||| ||||| |||||||| |||||||||||| ||||| |||||| |||||| |
|
|
| T |
9419464 |
caatgtcttctcattccatttctcaatcatcatcaattgagttccctatacatggttacaacaaaataatgaagatgttcatctccaattcacatgacaa |
9419365 |
T |
|
| Q |
170 |
ccc |
172 |
Q |
| |
|
||| |
|
|
| T |
9419364 |
ccc |
9419362 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 59; Significance: 6e-25; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 72 - 238
Target Start/End: Complemental strand, 28557221 - 28557055
Alignment:
| Q |
72 |
atgtcttctcattccattaccaattcatcttcaattgaaatgcctatttgtggttgcaacaaaacaatgaagatgtttatctcaaattcaattgacaacc |
171 |
Q |
| |
|
|||||||||||||||||| | ||| |||| ||||||||| ||||||| ||||| |||||||||| || | |||||| ||||| |||| || ||| || | |
|
|
| T |
28557221 |
atgtcttctcattccattgctaatacatcatcaattgaattgcctatatgtgggtgcaacaaaatcataaggatgttcatctccaatttaaatgaaaatc |
28557122 |
T |
|
| Q |
172 |
ctaaaaggagatactggaaatgcccaacatttatggtgagttattttgtataatactttgtttgttg |
238 |
Q |
| |
|
||||||||||||| |||||||| ||||| |||| |||||||| || ||||||||| || |||||| |
|
|
| T |
28557121 |
ctaaaaggagatattggaaatgtccaacctttacggtgagttcgttgttataatactatgattgttg |
28557055 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 74 - 238
Target Start/End: Complemental strand, 707816 - 707652
Alignment:
| Q |
74 |
gtcttctcattccattaccaattcatcttcaattgaaatgcctatttgtggttgcaacaaaacaatgaagatgtttatctcaaattcaattgacaaccct |
173 |
Q |
| |
|
|||||||| ||||||| | ||| |||| ||||||||| ||||||| ||||| |||||||||| || | |||||| ||||| |||| || ||| |||||| |
|
|
| T |
707816 |
gtcttctcgttccattgctaatacatcatcaattgaattgcctatatgtgggtgcaacaaaatcataaggatgttcatctccaatttaaatgaaaaccct |
707717 |
T |
|
| Q |
174 |
aaaaggagatactggaaatgcccaacatttatggtgagttattttgtataatactttgtttgttg |
238 |
Q |
| |
|
||||||||||| |||||||| ||||| |||| |||| ||| || ||||||||| ||||||||| |
|
|
| T |
707716 |
aaaaggagatattggaaatgtccaacctttacggtgtgttcgttgttataatactatgtttgttg |
707652 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 70 - 213
Target Start/End: Complemental strand, 41385450 - 41385307
Alignment:
| Q |
70 |
caatgtcttctcattccattaccaattcatcttcaattgaaatgcctatttgtggttgcaacaaaacaatgaagatgtttatctcaaattcaattgacaa |
169 |
Q |
| |
|
||||||||||| |||||||||| | ||||| || | ||| | ||||| |||||||||||||||| |||| ||||| || || |||||| ||||||| |
|
|
| T |
41385450 |
caatgtcttctaattccattactcaatcatcatccaatgagttacctatgtgtggttgcaacaaaattatgagaatgttcatatccaattcacttgacaa |
41385351 |
T |
|
| Q |
170 |
ccctaaaaggagatactggaaatgcccaacatttatggtgagtt |
213 |
Q |
| |
|
||||||||||||||| ||||||| |||||| | ||| ||||||| |
|
|
| T |
41385350 |
ccctaaaaggagatattggaaatacccaacctatattgtgagtt |
41385307 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 58; Significance: 2e-24; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 70 - 199
Target Start/End: Complemental strand, 31559201 - 31559072
Alignment:
| Q |
70 |
caatgtcttctcattccattaccaattcatcttcaattgaaatgcctatttgtggttgcaacaaaacaatgaagatgtttatctcaaattcaattgacaa |
169 |
Q |
| |
|
|||||||||||||||||||| | | ||||| |||||||| ||||||| |||||||||||||||| ||||| |||||| ||||| |||| | | |||| |
|
|
| T |
31559201 |
caatgtcttctcattccatttctcaatcatcatcaattgagttgcctatatgtggttgcaacaaaataatgaggatgttcatctccaatttatattacaa |
31559102 |
T |
|
| Q |
170 |
ccctaaaaggagatactggaaatgcccaac |
199 |
Q |
| |
|
|||||||| |||||| |||||||||||||| |
|
|
| T |
31559101 |
ccctaaaacgagatattggaaatgcccaac |
31559072 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 114 - 213
Target Start/End: Complemental strand, 22059773 - 22059674
Alignment:
| Q |
114 |
cctatttgtggttgcaacaaaacaatgaagatgtttatctcaaattcaattgacaaccctaaaaggagatactggaaatgcccaacatttatggtgagtt |
213 |
Q |
| |
|
||||| |||||||||||||||| |||| ||||| || || |||||| ||| |||||||||||||||||||||||||||||||| | ||||||||||| |
|
|
| T |
22059773 |
cctatgtgtggttgcaacaaaatcatgagaatgttcatatccaattcacatgaaaaccctaaaaggagatactggaaatgcccaacctatatggtgagtt |
22059674 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 305 - 362
Target Start/End: Complemental strand, 22059588 - 22059531
Alignment:
| Q |
305 |
tagttgcaagttgttcatatgggatgatgaaattgatggacatcctccatatgttcgt |
362 |
Q |
| |
|
|||||| ||||||| ||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
22059588 |
tagttgtaagttgtacatatgggatgatgaaattgaaggacatcctccatatgttcgt |
22059531 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 70 - 213
Target Start/End: Original strand, 42827733 - 42827876
Alignment:
| Q |
70 |
caatgtcttctcattccattaccaattcatcttcaattgaaatgcctatttgtggttgcaacaaaacaatgaagatgtttatctcaaattcaattgacaa |
169 |
Q |
| |
|
||||||||||| |||||||||| | ||||| || | ||| | ||||| || ||||||||||||| |||| ||||| || || |||||| ||||||| |
|
|
| T |
42827733 |
caatgtcttctaattccattactcaatcatcatccaatgagttacctatgtgcggttgcaacaaaattatgagaatgttcatatccaattcacttgacaa |
42827832 |
T |
|
| Q |
170 |
ccctaaaaggagatactggaaatgcccaacatttatggtgagtt |
213 |
Q |
| |
|
||||||||||||||| ||||||| | |||| | ||||||||||| |
|
|
| T |
42827833 |
ccctaaaaggagatattggaaatacacaacctatatggtgagtt |
42827876 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 55; Significance: 2e-22; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 70 - 288
Target Start/End: Original strand, 1134480 - 1134697
Alignment:
| Q |
70 |
caatgtcttctcattccattaccaattcatcttcaattgaaatgcctatttgtggttgcaacaaaacaatgaagatgtttatctcaaattcaattgacaa |
169 |
Q |
| |
|
|||||||||||||||||||| | ||||| |||| | | ||||||| ||||||||||| |||| |||| |||||| ||||| |||||| |||||| |
|
|
| T |
1134480 |
caatgtcttctcattccatttgtcaatcatcatcaaatcagttgcctatatgtggttgcaaaaaaattatgaggatgttcatctccaattcacatgacaa |
1134579 |
T |
|
| Q |
170 |
ccctaaaaggagatactggaaatgcccaacatttatggtgagttattttgtataatactttgtttgttgggtattttcgcacactttaatgtaattaaaa |
269 |
Q |
| |
|
|| ||||| |||||| |||||||||||||| |||||||||| | || ||||||| ||||||| ||| ||||||| |||| |||||||||||||| | |
|
|
| T |
1134580 |
cc-taaaaagagatattggaaatgcccaacctttatggtgaatgtgttgttataatagtttgttttttgtttattttcccacattttaatgtaattaata |
1134678 |
T |
|
| Q |
270 |
gatgtgtatggttgatttt |
288 |
Q |
| |
|
| || |||| |||||||| |
|
|
| T |
1134679 |
gttgcatatgattgatttt |
1134697 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 114 - 213
Target Start/End: Complemental strand, 7799823 - 7799724
Alignment:
| Q |
114 |
cctatttgtggttgcaacaaaacaatgaagatgtttatctcaaattcaattgacaaccctaaaaggagatactggaaatgcccaacatttatggtgagtt |
213 |
Q |
| |
|
||||| |||||||||||||||| ||||| ||||| || || ||||||| || |||||||||||||||||||||||||||||||| | ||||||||||| |
|
|
| T |
7799823 |
cctatgtgtggttgcaacaaaatcatgaaaatgttcatatccaattcaagtgcaaaccctaaaaggagatactggaaatgcccaacctatatggtgagtt |
7799724 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 70 - 213
Target Start/End: Complemental strand, 19597620 - 19597477
Alignment:
| Q |
70 |
caatgtcttctcattccattaccaattcatcttcaattgaaatgcctatttgtggttgcaacaaaacaatgaagatgtttatctcaaattcaattgacaa |
169 |
Q |
| |
|
||||||||||| |||||||||| | ||||| || | ||| | ||||| |||||||||||||||| |||| ||||| || || |||||| ||||||| |
|
|
| T |
19597620 |
caatgtcttctaattccattactcaatcatcatccaatgagttacctatgtgtggttgcaacaaaattatgagaatgttcatatccaattcagttgacaa |
19597521 |
T |
|
| Q |
170 |
ccctaaaaggagatactggaaatgcccaacatttatggtgagtt |
213 |
Q |
| |
|
||||||||||||||| || |||| |||||| | ||||||||||| |
|
|
| T |
19597520 |
ccctaaaaggagatattgaaaatacccaacctatatggtgagtt |
19597477 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 305 - 362
Target Start/End: Complemental strand, 7799640 - 7799583
Alignment:
| Q |
305 |
tagttgcaagttgttcatatgggatgatgaaattgatggacatcctccatatgttcgt |
362 |
Q |
| |
|
|||||| ||||||| ||||||||||||||||||||| |||||| |||||||||||||| |
|
|
| T |
7799640 |
tagttgtaagttgtacatatgggatgatgaaattgaaggacatgctccatatgttcgt |
7799583 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 114 - 211
Target Start/End: Complemental strand, 19401734 - 19401637
Alignment:
| Q |
114 |
cctatttgtggttgcaacaaaacaatgaagatgtttatctcaaattcaattgacaaccctaaaaggagatactggaaatgcccaacatttatggtgag |
211 |
Q |
| |
|
||||| |||||||||||||||| |||| ||||| || || |||||| ||| |||||||||||||||||||||||||||| ||| | ||||||||| |
|
|
| T |
19401734 |
cctatgtgtggttgcaacaaaatcatgagaatgttcatatccaattcacgtgaaaaccctaaaaggagatactggaaatgccaaacttatatggtgag |
19401637 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 156 - 213
Target Start/End: Complemental strand, 19581140 - 19581083
Alignment:
| Q |
156 |
aattcaattgacaaccctaaaaggagatactggaaatgcccaacatttatggtgagtt |
213 |
Q |
| |
|
||||||||||||||| ||||||||||||| ||||||| |||||| | |||||| |||| |
|
|
| T |
19581140 |
aattcaattgacaactctaaaaggagatattggaaatacccaacctgtatggttagtt |
19581083 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 50; Significance: 1e-19; HSPs: 7)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 112 - 201
Target Start/End: Complemental strand, 5386833 - 5386744
Alignment:
| Q |
112 |
tgcctatttgtggttgcaacaaaacaatgaagatgtttatctcaaattcaattgacaaccctaaaaggagatactggaaatgcccaacat |
201 |
Q |
| |
|
|||||||||| ||||||||||||| |||| |||||| || || ||||||||||| |||||||||||||| || |||||||||||||||| |
|
|
| T |
5386833 |
tgcctatttgctgttgcaacaaaaccatgaggatgttaatatccaattcaattgaaaaccctaaaaggaggtattggaaatgcccaacat |
5386744 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 112 - 200
Target Start/End: Original strand, 5386034 - 5386122
Alignment:
| Q |
112 |
tgcctatttgtggttgcaacaaaacaatgaagatgtttatctcaaattcaattgacaaccctaaaaggagatactggaaatgcccaaca |
200 |
Q |
| |
|
||||||||||||||| ||| |||| |||| |||||| || | ||||||||||| ||| ||||||||||||| ||||||||||||||| |
|
|
| T |
5386034 |
tgcctatttgtggtttcaattaaaccatgaggatgttcatatgcaattcaattgaaaactctaaaaggagatattggaaatgcccaaca |
5386122 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 305 - 362
Target Start/End: Original strand, 5386219 - 5386276
Alignment:
| Q |
305 |
tagttgcaagttgttcatatgggatgatgaaattgatggacatcctccatatgttcgt |
362 |
Q |
| |
|
|||||| ||||||| || |||||||||||| ||||| ||||||||||||||||||||| |
|
|
| T |
5386219 |
tagttgtaagttgtacaaatgggatgatgatattgaaggacatcctccatatgttcgt |
5386276 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 276 - 355
Target Start/End: Original strand, 51253101 - 51253179
Alignment:
| Q |
276 |
tatggttgattttgtttttaggatcctaatagttgcaagttgttcatatgggatgatgaaattgatggacatcctccata |
355 |
Q |
| |
|
|||| ||||||||||||| ||| | ||||||||||| | ||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
51253101 |
tatgattgattttgtttt-aggttggtaatagttgcaggatgttcatatgggatgatgaaattgaaatacatcctccata |
51253179 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 163 - 213
Target Start/End: Original strand, 31200070 - 31200120
Alignment:
| Q |
163 |
ttgacaaccctaaaaggagatactggaaatgcccaacatttatggtgagtt |
213 |
Q |
| |
|
|||||||||||||||||||||| ||||||| |||||| | ||||||||||| |
|
|
| T |
31200070 |
ttgacaaccctaaaaggagatattggaaatacccaacctatatggtgagtt |
31200120 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 306 - 362
Target Start/End: Original strand, 5496660 - 5496716
Alignment:
| Q |
306 |
agttgcaagttgttcatatgggatgatgaaattgatggacatcctccatatgttcgt |
362 |
Q |
| |
|
||||| || |||||||||||| | ||||||||||||| ||||||| ||||||||||| |
|
|
| T |
5496660 |
agttgtaaattgttcatatggaacgatgaaattgatgaacatcctacatatgttcgt |
5496716 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 70 - 199
Target Start/End: Original strand, 34594638 - 34594767
Alignment:
| Q |
70 |
caatgtcttctcattccattaccaattcatcttcaattgaaatgcctatttgtggttgcaacaaaacaatgaagatgtttatctcaaattcaattgacaa |
169 |
Q |
| |
|
||||||||||||||| |||| | | |||| |||||||| ||||||| | | ||||||| |||| || || |||||| ||||| |||||| |||||| |
|
|
| T |
34594638 |
caatgtcttctcatttcatttctcaaccatcatcaattgagttgcctatatatagttgcaataaaataacgaggatgttcatctccaattcacatgacaa |
34594737 |
T |
|
| Q |
170 |
ccctaaaaggagatactggaaatgcccaac |
199 |
Q |
| |
|
|||||||| ||||| || ||||| ||||| |
|
|
| T |
34594738 |
tcctaaaagaagatattgaaaatgtccaac |
34594767 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0129 (Bit Score: 48; Significance: 2e-18; HSPs: 2)
Name: scaffold0129
Description:
Target: scaffold0129; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 114 - 213
Target Start/End: Complemental strand, 3867 - 3768
Alignment:
| Q |
114 |
cctatttgtggttgcaacaaaacaatgaagatgtttatctcaaattcaattgacaaccctaaaaggagatactggaaatgcccaacatttatggtgagtt |
213 |
Q |
| |
|
||||| |||||||||||||||| |||| ||||| || || |||||| ||| |||||||||||||||||||||||||||||||| | ||||||||||| |
|
|
| T |
3867 |
cctatgtgtggttgcaacaaaatcatgagaatgttcatatccaattcacatgaaaaccctaaaaggagatactggaaatgcccaacctatatggtgagtt |
3768 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0129; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 305 - 362
Target Start/End: Complemental strand, 3682 - 3625
Alignment:
| Q |
305 |
tagttgcaagttgttcatatgggatgatgaaattgatggacatcctccatatgttcgt |
362 |
Q |
| |
|
|||||| ||||||| ||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
3682 |
tagttgtaagttgtacatatgggatgatgaaattgaaggacatcctccatatgttcgt |
3625 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 70 - 213
Target Start/End: Complemental strand, 17707118 - 17706976
Alignment:
| Q |
70 |
caatgtcttctcattccattaccaattcatcttcaattgaaatgcctatttgtggttgcaacaaaacaatgaagatgtttatctcaaattcaattgacaa |
169 |
Q |
| |
|
|||||||||||| ||||||| | ||| |||| ||||||||| | ||||| ||||| ||||||||| || | |||||| ||||| |||| || ||| || |
|
|
| T |
17707118 |
caatgtcttctccttccattgctaatacatcatcaattgaattacctatatgtgggcgcaacaaaatcataaggatgttcatctccaatttaaatgaaaa |
17707019 |
T |
|
| Q |
170 |
ccctaaaaggagatactggaaatgcccaacatttatggtgagtt |
213 |
Q |
| |
|
|||| |||| ||||| |||||||| ||||| |||| |||||||| |
|
|
| T |
17707018 |
ccct-aaagaagatattggaaatgtccaacctttacggtgagtt |
17706976 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 143 - 238
Target Start/End: Original strand, 36900336 - 36900431
Alignment:
| Q |
143 |
gatgtttatctcaaattcaattgacaaccctaaaaggagatactggaaatgcccaacatttatggtgagttattttgtataatactttgtttgttg |
238 |
Q |
| |
|
|||||| ||||| |||| || ||| ||||||||||||||||| || ||||| ||||| |||| |||||||| || ||||||||| ||||||||| |
|
|
| T |
36900336 |
gatgttcatctccaatttaaatgaaaaccctaaaaggagatattgaaaatgtccaacctttacggtgagttcgttgttataatactatgtttgttg |
36900431 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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