View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11557A_low_7 (Length: 559)

Name: NF11557A_low_7
Description: NF11557A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11557A_low_7
NF11557A_low_7
[»] chr6 (1 HSPs)
chr6 (379-553)||(11077103-11077273)
[»] chr3 (1 HSPs)
chr3 (123-296)||(28244783-28244956)
[»] chr1 (1 HSPs)
chr1 (120-296)||(16572831-16573009)
[»] chr2 (4 HSPs)
chr2 (297-383)||(29861918-29862004)
chr2 (297-373)||(18682319-18682395)
chr2 (27-67)||(23255462-23255502)
chr2 (288-376)||(34077571-34077659)
[»] chr7 (1 HSPs)
chr7 (297-351)||(39249649-39249703)
[»] scaffold0036 (1 HSPs)
scaffold0036 (322-383)||(28728-28789)


Alignment Details
Target: chr6 (Bit Score: 146; Significance: 1e-76; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 146; E-Value: 1e-76
Query Start/End: Original strand, 379 - 553
Target Start/End: Original strand, 11077103 - 11077273
Alignment:
Q  379 attcaatagaatttgcgtgtgtagtggtctttttcgagagtccaatggtaattggttaaagggttacaatcaaagaattatagcttgcttgtggtgccct 478  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11077103 attcaatagaatttgcgtgtgtagtggtctttttcgagagtccaatggtaattggttaaagggttacaatcaaagaattatagcttgcttgtggtgccct 11077202  T
Q  479 tcttactagaacatggagtgtgtacatgggaatgctggaaaataaatagggaaggctttactcacctcatagttg 553  Q
    |||| || ||||||||||||||||||||||||||||||     ||||||||||||||||||||||||||||||||    
T  11077203 tcttgctggaacatggagtgtgtacatgggaatgctgg----gaaatagggaaggctttactcacctcatagttg 11077273  T

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Target: chr3 (Bit Score: 54; Significance: 9e-22; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 123 - 296
Target Start/End: Original strand, 28244783 - 28244956
Alignment:
Q  123 aacaacctagttctaaatttgcctatatatggggaacccttgcaaacattttattcattcgaaaaccaaacagtgcaagatgaaggcaaggagcaaggct 222  Q
    ||||||||||||||||| || | ||||||  | || |||||||||||| ||| |||||||  ||||   || ||||| | ||||||||||||||||||||    
T  28244783 aacaacctagttctaaacttacttatatagagagaccccttgcaaacactttcttcattccgaaactggacggtgcatggtgaaggcaaggagcaaggct 28244882  T
Q  223 atcatcaaggaggtggaaactaaggtttctcccaattctctctcttgtgagtatgttatgtaatcttttcttgt 296  Q
    ||||||||||| | |||| ||| |||||||||||||| |||  |||   |||||||| ||||||  ||||||||    
T  28244883 atcatcaaggatgaggaagctagggtttctcccaattttcttccttcaaagtatgttttgtaattctttcttgt 28244956  T

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Target: chr1 (Bit Score: 44; Significance: 9e-16; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 120 - 296
Target Start/End: Complemental strand, 16573009 - 16572831
Alignment:
Q  120 cccaacaacctagttctaaatttgcctatatatggggaacccttgcaaacattttattcattcgaaaaccaaacagtgcaag--atgaaggcaaggagca 217  Q
    |||||||||||||||| ||| |||| | ||||||| || ||||| |||||| |||||||||||  |||||| |  |||||||   ||||||||||||| |    
T  16573009 cccaacaacctagttcaaaacttgcatgtatatggagaccccttacaaacactttattcattcataaaccagatggtgcaaggtgtgaaggcaaggagta 16572910  T
Q  218 aggctatcatcaaggaggtggaaactaaggtttctcccaattctctctcttgtgagtatgttatgtaatcttttcttgt 296  Q
     | ||||||||||||| | ||||  || ||||||  |||||| |||| |||  ||||||||| ||||||  ||||||||    
T  16572909 ggtctatcatcaaggatgaggaagatatggtttcatccaattttctccctttagagtatgttttgtaattctttcttgt 16572831  T

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Target: chr2 (Bit Score: 35; Significance: 0.0000000002; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 297 - 383
Target Start/End: Complemental strand, 29862004 - 29861918
Alignment:
Q  297 catgagcaactaaactctctctgattagggttttaaaatgaacctatatttatttcttgaaatccattaatgcaatttctatattca 383  Q
    |||||||||||||||||||| ||||||| ||||||  ||| |||| ||||| ||| |||||||  ||||||| || |||| ||||||    
T  29862004 catgagcaactaaactctctttgattagcgttttatgatgtacctctatttgtttgttgaaattaattaatgtaacttctttattca 29861918  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 297 - 373
Target Start/End: Complemental strand, 18682395 - 18682319
Alignment:
Q  297 catgagcaactaaactctctctgattagggttttaaaatgaacctatatttatttcttgaaatccattaatgcaatt 373  Q
    ||||||||||||||| | |||| ||||||||| ||| |||||||| | ||||||| || |||   ||||||||||||    
T  18682395 catgagcaactaaacaccctctaattagggttctaagatgaacctttgtttatttgttaaaagttattaatgcaatt 18682319  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 27 - 67
Target Start/End: Complemental strand, 23255502 - 23255462
Alignment:
Q  27 aagaagattactcaaagaacgaagaaaaatgacattttcca 67  Q
    |||||||||||| ||||||| |||||||| |||||||||||    
T  23255502 aagaagattacttaaagaacaaagaaaaacgacattttcca 23255462  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 288 - 376
Target Start/End: Original strand, 34077571 - 34077659
Alignment:
Q  288 ttttcttgtcatgagcaactaaactctctctgattagggttttaaaatgaacctatatttatttcttgaaatccattaatgcaatttct 376  Q
    |||| ||| |||||| ||| |||||  || ||||||| ||| ||||||||  || ||||||||| ||||||| | ||||||||||||||    
T  34077571 ttttattgccatgagtaaccaaacttcctttgattagagttctaaaatgagtctctatttatttgttgaaattcgttaatgcaatttct 34077659  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 297 - 351
Target Start/End: Complemental strand, 39249703 - 39249649
Alignment:
Q  297 catgagcaactaaactctctctgattagggttttaaaatgaacctatatttattt 351  Q
    |||||| |||||||| ||||  |||||||||| |||||||||||| |||||||||    
T  39249703 catgagtaactaaacactctaagattagggttctaaaatgaacctctatttattt 39249649  T

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Target: scaffold0036 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0036
Description:

Target: scaffold0036; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 322 - 383
Target Start/End: Complemental strand, 28789 - 28728
Alignment:
Q  322 tagggttttaaaatgaacctatatttatttcttgaaatccattaatgcaatttctatattca 383  Q
    ||||||| ||| |||||||| |||||||||  | ||||| ||||||||||||||| ||||||    
T  28789 tagggttctaagatgaacctttatttatttggtaaaatctattaatgcaatttctttattca 28728  T

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