View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11557A_low_70 (Length: 362)
Name: NF11557A_low_70
Description: NF11557A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11557A_low_70 |
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Alignment Details
Target: chr8 (Bit Score: 343; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 343; E-Value: 0
Query Start/End: Original strand, 15 - 357
Target Start/End: Complemental strand, 37921162 - 37920820
Alignment:
| Q |
15 |
atgaaagatctaataacagaagcaaaaacagtcataaaagttccatcatttcagataattgtagctcagggagtatttggatcgtttcgagggtcaagtt |
114 |
Q |
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| T |
37921162 |
atgaaagatctaataacagaagcaaaaacagtcataaaagttccatcatttcagataattgtagctcagggagtatttggatcgtttcgagggtcaagtt |
37921063 |
T |
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| Q |
115 |
tatcatttttcactctttggttagaactaataggcttctcacatggtacaacagcaattatttggacagtatttataatttctaattcatttggtggtct |
214 |
Q |
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| T |
37921062 |
tatcatttttcactctttggttagaactaataggcttctcacatggtacaacagcaattatttggacagtatttataatttctaattcatttggtggtct |
37920963 |
T |
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| Q |
215 |
atttggaggatggtttggggattttttatctcaacggttaccaaacaccggaagaataatgttggcacaaataagtgcgggttcaaccattcctttagca |
314 |
Q |
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| T |
37920962 |
atttggaggatggtttggggattttttatctcaacggttaccaaacaccggaagaataatgttggcacaaataagtgcgggttcaaccattcctttagca |
37920863 |
T |
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| Q |
315 |
gcaattttgttgttattattgcctaatgatccatccacgccct |
357 |
Q |
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| T |
37920862 |
gcaattttgttgttattattgcctaatgatccatccacgccct |
37920820 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 143; E-Value: 5e-75
Query Start/End: Original strand, 18 - 352
Target Start/End: Complemental strand, 37925002 - 37924668
Alignment:
| Q |
18 |
aaagatctaataacagaagcaaaaacagtcataaaagttccatcatttcagataattgtagctcagggagtatttggatcgtttcgagggtcaagtttat |
117 |
Q |
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| T |
37925002 |
aaagacctaataaaagaagcaaaatcggttataaaaattccatcgtttcagataatagtagctcagggagtttttggatcattcccatggtcaggtttgt |
37924903 |
T |
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| Q |
118 |
catttttcactctttggttagaactaataggcttctcacatggtacaacagcaattatttggacagtatttataatttctaattcatttggtggtctatt |
217 |
Q |
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| T |
37924902 |
catttgccactctttggttagaactaataggcttctcacatggtacaacagcaattctctggaccttctttatagtttctgcttcatttgggtctctgtt |
37924803 |
T |
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| Q |
218 |
tggaggatggtttggggattttttatctcaacggttaccaaacaccggaagaataatgttggcacaaataagtgcgggttcaaccattcctttagcagca |
317 |
Q |
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| T |
37924802 |
tggaggatggttcggagattatttatccctacggttaccaaacactgggagaataatgttgtcccaaataagtgctggttcagctgttcctttagcagcc |
37924703 |
T |
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| Q |
318 |
attttgttgttattattgcctaatgatccatccac |
352 |
Q |
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| T |
37924702 |
attctgttgttaatgttacctgatgatccatccac |
37924668 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 15 - 349
Target Start/End: Complemental strand, 37936166 - 37935832
Alignment:
| Q |
15 |
atgaaagatctaataacagaagcaaaaacagtcataaaagttccatcatttcagataattgtagctcagggagtatttggatcgtttcgagggtcaagtt |
114 |
Q |
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|||||||||||| | | ||||||||| |||| |||| | ||||| ||||||| ||| |||| ||||| ||||| | ||||| |||| |||| | |
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| T |
37936166 |
atgaaagatctactgaaagaagcaaagtcagttataagaattccaacatttcaaatacttgtggctcaaggagtctccggatcatttccctggtctgcgt |
37936067 |
T |
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| Q |
115 |
tatcatttttcactctttggttagaactaataggcttctcacatggtacaacagcaattatttggacagtatttataatttctaattcatttggtggtct |
214 |
Q |
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| |||||| |||||||||| ||||| ||||||||||||| || ||||||||| | ||||| | |||||||| || || ||||||||| ||||| |
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| T |
37936066 |
tgtcatttgccactctttggctagaattaataggcttctcccacatgacaacagcattgctttggtccctatttatagttgctgtttcatttgggggtct |
37935967 |
T |
|
| Q |
215 |
atttggaggatggtttggggattttttatctcaacggttaccaaacaccggaagaataatgttggcacaaataagtgcgggttcaaccattcctttagca |
314 |
Q |
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|||||||||||| | |||||| | ||||| ||| |||||||||| ||||||||||||||||| |||||||||| | |||||| || ||||| |||| |
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| T |
37935966 |
gtttggaggatggatgggggatatgttatcccaaaggttaccaaattccggaagaataatgttgtcacaaataagctcaggttcagccgttcctctagcc |
37935867 |
T |
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| Q |
315 |
gcaattttgttgttattattgcctaatgatccatc |
349 |
Q |
| |
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|||||||||||||| ||||||| |||||||||| |
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| T |
37935866 |
gcaattttgttgttgggattgcctgatgatccatc |
37935832 |
T |
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