View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11557A_low_79 (Length: 353)
Name: NF11557A_low_79
Description: NF11557A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11557A_low_79 |
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Alignment Details
Target: chr6 (Bit Score: 162; Significance: 2e-86; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 76 - 332
Target Start/End: Original strand, 3079877 - 3080134
Alignment:
| Q |
76 |
tcatttttccgtaggtaaaagtctgggatacaacaattttgttgtcaatatgaattattgctctatatgttgtgttgaatttgnnnnnnnctccaatact |
175 |
Q |
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| T |
3079877 |
tcatttttccgtaggtaaaagtctgggatacaacaattttgttgccaatatgaatcattgctttatatcttgtgttgaatttgtttttttctccaatact |
3079976 |
T |
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| Q |
176 |
tttttaacgaaaattgtcaaccctagatatataagtaccatttatataataatgataacaaaggtaaac-nnnnnnnnnnnnnnnnnctaatatttaaaa |
274 |
Q |
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| T |
3079977 |
tttttaacgaaaattgtcaaccctagatatataagtaccatttatataataatgataacaaaggtaaacaaaaaataaaataaaaaactaatatttaaaa |
3080076 |
T |
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| Q |
275 |
gaacaagttgatacctgtgttaaattaagatagatcctttcccacaagttcatctata |
332 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3080077 |
gaacaagttgatacctgtgttaaattaagatagatcctttcccacaagttcatctata |
3080134 |
T |
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