View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11557A_low_8 (Length: 555)

Name: NF11557A_low_8
Description: NF11557A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11557A_low_8
NF11557A_low_8
[»] chr6 (2 HSPs)
chr6 (192-534)||(4917405-4917747)
chr6 (6-63)||(4917745-4917802)
[»] chr8 (6 HSPs)
chr8 (192-531)||(3013727-3014066)
chr8 (179-531)||(2928703-2929055)
chr8 (182-525)||(2945347-2945690)
chr8 (182-392)||(2919204-2919414)
chr8 (189-392)||(37794082-37794285)
chr8 (313-362)||(2941831-2941880)
[»] chr3 (1 HSPs)
chr3 (180-528)||(1508063-1508405)
[»] chr2 (1 HSPs)
chr2 (245-392)||(28023151-28023298)


Alignment Details
Target: chr6 (Bit Score: 331; Significance: 0; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 192 - 534
Target Start/End: Complemental strand, 4917747 - 4917405
Alignment:
Q  192 aagggaaagcagaactgagaaactcctcatcttcatgctcaatctgcagattcttggattccattagaaaatcaatttcttcattcttaaatttcagaaa 291  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4917747 aagggaaagcagaactgagaaactcctcatcttcatgctcaatctgcagattcttggattccattagaaaatcaatttcttcattcttaaatttcagaaa 4917648  T
Q  292 gaaacccgttgtgattagcttagtgagtgcaggaacatgatcgtgattctcacgcaaaacaccctcagatattgcttcagaaaaatatgtagcatatttc 391  Q
    |||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4917647 gaaacccgttgtgattagatcagtgagtgcaggaacatgatcgtgattctcacgcaaaacaccctcagatattgcttcagaaaaatatgtagcatatttc 4917548  T
Q  392 aatatttcatcaggagctccatccatcttttggattataaacttgcagctttggctctcccaacgcacccttttgttggctttcttggtaatgattttcc 491  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  4917547 aatatttcatcaggagctccatccatcttttggattataaacttgcagctttgactctcccaacgcacccttttgttggctttcttggtaatgattttcc 4917448  T
Q  492 ctgatgataatgataaactatagcttacattgattggctcctt 534  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  4917447 ctgatgataatgataaactatagcttacattgattggctcctt 4917405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 6 - 63
Target Start/End: Complemental strand, 4917802 - 4917745
Alignment:
Q  6 caaagaggccgataaagtctaaaaagtgctcaacagatgaatgtaaaacaagcaaaag 63  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4917802 caaacaggccgataaagtctaaaaagtgctcaacagatgaatgtaaaacaagcaaaag 4917745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 176; Significance: 1e-94; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 176; E-Value: 1e-94
Query Start/End: Original strand, 192 - 531
Target Start/End: Complemental strand, 3014066 - 3013727
Alignment:
Q  192 aagggaaagcagaactgagaaactcctcatcttcatgctcaatctgcagattcttggattccattagaaaatcaatttcttcattcttaaatttcagaaa 291  Q
    ||||||| ||||||||||||||||||||||| ||| | |||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||  |     
T  3014066 aagggaaggcagaactgagaaactcctcatcctcaaggtcaatctgaagattcttggattccattagaaaatcaatttcttcattcttgaatttcatcac 3013967  T
Q  292 gaaacccgttgtgattagcttagtgagtgcaggaacatgatcgtgattctcacgcaaaacaccctcagatattgcttcagaaaaatatgtagcatatttc 391  Q
     ||||||  ||||||||| |  |  |||||||||| || ||| |||||||||||||||| |||||| |||||||||||||| |||| ||||||||| |||    
T  3013966 aaaacccaatgtgattagttcggccagtgcaggaatatcatcatgattctcacgcaaaataccctcggatattgcttcagagaaatttgtagcatacttc 3013867  T
Q  392 aatatttcatcaggagctccatccatcttttggattataaacttgcagctttggctctcccaacgcacccttttgttggctttcttggtaatgattttcc 491  Q
    |||   ||| || || ||||||||||||| ||||| ||||||||||| ||||| || |||||||| ||||||||||| | ||||||||||||||| | ||    
T  3013866 aatgaatcaccaagaactccatccatcttctggatgataaacttgcaactttgactttcccaacgtacccttttgtttgatttcttggtaatgatgtccc 3013767  T
Q  492 ctgatgataatgataaactatagcttacattgattggctc 531  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  3013766 ctgatgataatgataaactatagcttacattgattggctc 3013727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 173; E-Value: 9e-93
Query Start/End: Original strand, 179 - 531
Target Start/End: Original strand, 2928703 - 2929055
Alignment:
Q  179 tagacttagccagaagggaaagcagaactgagaaactcctcatcttcatgctcaatctgcagattcttggattccattagaaaatcaatttcttcattct 278  Q
    ||||||||| || ||||||| ||||||||||| ||||||||||| ||| | |||||||| ||||||||||||||||||||||||||||||||||||||||    
T  2928703 tagacttagtcaaaagggaaggcagaactgaggaactcctcatcctcaaggtcaatctgaagattcttggattccattagaaaatcaatttcttcattct 2928802  T
Q  279 taaatttcagaaagaaacccgttgtgattagcttagtgagtgcaggaacatgatcgtgattctcacgcaaaacaccctcagatattgcttcagaaaaata 378  Q
    ||||||||||||  || ||   ||||||||| |  | |||||||| ||||||||| |||||||||||||||| |||||| |||||||||||||| |||      
T  2928803 taaatttcagaacaaagcctagtgtgattagttccgagagtgcagcaacatgatcatgattctcacgcaaaataccctcggatattgcttcagagaaact 2928902  T
Q  379 tgtagcatatttcaatatttcatcaggagctccatccatcttttggattataaacttgcagctttggctctcccaacgcacccttttgttggctttcttg 478  Q
    ||||||| || |||||   ||| ||||| || | |||||||| ||||| ||||||||||||||||| || |||||||| ||||||||||| ||||||||     
T  2928903 tgtagcacatctcaatgcatcaccaggaacttcctccatcttctggatgataaacttgcagctttgactttcccaacgtacccttttgtttgctttcttt 2929002  T
Q  479 gtaatgattttccctgatgataatgataaactatagcttacattgattggctc 531  Q
    |||||||||| ||||||||| ||||| |||||||||||||||||||| |||||    
T  2929003 gtaatgatttcccctgatgacaatgacaaactatagcttacattgatcggctc 2929055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 152; E-Value: 3e-80
Query Start/End: Original strand, 182 - 525
Target Start/End: Original strand, 2945347 - 2945690
Alignment:
Q  182 acttagccagaagggaaagcagaactgagaaactcctcatcttcatgctcaatctgcagattcttggattccattagaaaatcaatttcttcattcttaa 281  Q
    |||||||||||||||||  |||||||||| |||||||||||| |||| |||||||||| |||||| |||||||| ||||||||||||||||||||||| |    
T  2945347 acttagccagaagggaacacagaactgaggaactcctcatctgcatgttcaatctgcaaattcttcgattccatgagaaaatcaatttcttcattcttga 2945446  T
Q  282 atttcagaaagaaacccgttgtgattagcttagtgagtgcaggaacatgatcgtgattctcacgcaaaacaccctcagatattgcttcagaaaaatatgt 381  Q
    ||||||  |   |||||  ||||||||| | ||  ||||||||||||| ||| ||||||||| |||||| |||||| |||||||||||||| |||| |||    
T  2945447 atttcatcacataacccaatgtgattagttcagccagtgcaggaacataatcatgattctcaggcaaaataccctcggatattgcttcagagaaatttgt 2945546  T
Q  382 agcatatttcaatatttcatcaggagctccatccatcttttggattataaacttgcagctttggctctcccaacgcacccttttgttggctttcttggta 481  Q
    |||||| |||||    ||| | ||| || | || ||||| ||||| |||||||| |||||||| || |||||||| ||||||||||| |||||||| |||    
T  2945547 agcataattcaaagaatcaccgggaacttcctcaatcttctggatgataaacttacagctttgactttcccaacgtacccttttgtttgctttctttgta 2945646  T
Q  482 atgattttccctgatgataatgataaactatagcttacattgat 525  Q
    ||||||| ||| ||||||||||||||||||||||||||||||||    
T  2945647 atgatttcccccgatgataatgataaactatagcttacattgat 2945690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 182 - 392
Target Start/End: Original strand, 2919204 - 2919414
Alignment:
Q  182 acttagccagaagggaaagcagaactgagaaactcctcatcttcatgctcaatctgcagattcttggattccattagaaaatcaatttcttcattcttaa 281  Q
    |||||| |||||||||| | ||||||||| |||| |||||| |||     |||||| | ||||||||| ||||| ||||| ||||| ||||||||||| |    
T  2919204 acttagtcagaagggaaggaagaactgaggaacttctcatcctcaaagaaaatctgtaaattcttggactccatgagaaattcaatatcttcattcttga 2919303  T
Q  282 atttcagaaagaaacccgttgtgattagcttagtgagtgcaggaacatgatcgtgattctcacgcaaaacaccctcagatattgcttcagaaaaatatgt 381  Q
    ||||||| |  ||||||  |||||| || | || ||| ||||||||| |||| |||||||||| ||||||||| || |||||||||||||| ||||||||    
T  2919304 atttcagcataaaacccaatgtgatcagttcagagagagcaggaacaagatcatgattctcacacaaaacaccttctgatattgcttcagagaaatatgt 2919403  T
Q  382 agcatatttca 392  Q
     ||||||||||    
T  2919404 ggcatatttca 2919414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 189 - 392
Target Start/End: Original strand, 37794082 - 37794285
Alignment:
Q  189 cagaagggaaagcagaactgagaaactcctcatcttcatgctcaatctgcagattcttggattccattagaaaatcaatttcttcattcttaaatttcag 288  Q
    |||||||||| ||||||||||| | || |||||||||      ||||||||  || ||||||||||| ||||| ||||| ||||||||||| ||||||||    
T  37794082 cagaagggaaggcagaactgaggagcttctcatcttcccagaaaatctgcatgtttttggattccatcagaaattcaatatcttcattcttgaatttcag 37794181  T
Q  289 aaagaaacccgttgtgattagcttagtgagtgcaggaacatgatcgtgattctcacgcaaaacaccctcagatattgcttcagaaaaatatgtagcatat 388  Q
     |  ||||||  |||||| |  | ||  || |||||||||  ||| |||||||||  ||||||||| || ||||||| |||||| |||||||| ||||||    
T  37794182 cacaaaacccaatgtgatcaattcagatagggcaggaacaaaatcatgattctcagacaaaacaccttctgatattgtttcagagaaatatgtcgcatat 37794281  T
Q  389 ttca 392  Q
    ||||    
T  37794282 ttca 37794285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 313 - 362
Target Start/End: Original strand, 2941831 - 2941880
Alignment:
Q  313 agtgagtgcaggaacatgatcgtgattctcacgcaaaacaccctcagata 362  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  2941831 agtgagtgcaggaacatgatcatgattctcacgcaaaacaccctcagata 2941880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 138; Significance: 7e-72; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 138; E-Value: 7e-72
Query Start/End: Original strand, 180 - 528
Target Start/End: Complemental strand, 1508405 - 1508063
Alignment:
Q  180 agacttagccagaagggaaagcagaactgagaaactcctcatcttcatgctcaatctgcagattcttggattccattagaaaatcaatttcttcattctt 279  Q
    ||||||||  ||||||||| ||||||||||| |||| |||||| ||| | || |||| ||||| |||||||||||| |||||||||||||||||||||||    
T  1508405 agacttagttagaagggaaggcagaactgaggaacttctcatcctcagggtcgatctccagatacttggattccataagaaaatcaatttcttcattctt 1508306  T
Q  280 aaatttcagaaagaaacccgttgtgattagcttagtgagtgcaggaacatgatcgtgattctcacgcaaaacaccctcagatattgcttcagaaaaatat 379  Q
     ||||||||||| || ||   ||||||||| ||||  ||||||||||||||||| ||||| ||| |||||||||||||||||||||||||||| |||| |    
T  1508305 gaatttcagaaaaaaccctaatgtgattagtttagatagtgcaggaacatgatcatgattttcatgcaaaacaccctcagatattgcttcagagaaattt 1508206  T
Q  380 gtagcatatttcaatatttcatcaggagctccatccatcttttggattataaacttgcagctttggctctcccaacgcacccttttgttggctttcttgg 479  Q
    ||| |||||||||||   || |||      ||||||||||| ||||| ||||||||| | ||||| || |||||||||||||||||||| |||||||| |    
T  1508205 gtaacatatttcaatgaatcctca------ccatccatcttctggatgataaacttggaactttgactttcccaacgcacccttttgtttgctttctttg 1508112  T
Q  480 taatgattttccctgatgataatgataaactatagcttacattgattgg 528  Q
    ||||||| |  || ||||||| ||  | |||||||||||||||||||||    
T  1508111 taatgatgtctccggatgatagtggcagactatagcttacattgattgg 1508063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 44; Significance: 9e-16; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 245 - 392
Target Start/End: Original strand, 28023151 - 28023298
Alignment:
Q  245 ttggattccattagaaaatcaatttcttcattcttaaatttcagaaagaaacccgttgtgattagcttagtgagtgcaggaacatgatcgtgattctcac 344  Q
    ||||||||||| || || ||||| ||||||||||| |||||||| |  ||||||  |||||| |  | || ||| |||||||||  |||||||||||||     
T  28023151 ttggattccatcaggaattcaatatcttcattcttgaatttcagcacaaaacccaatgtgatcaattcagagagggcaggaacaaaatcgtgattctcag 28023250  T
Q  345 gcaaaacaccctcagatattgcttcagaaaaatatgtagcatatttca 392  Q
     ||||||||| || ||||||| |||||| | |||||| ||||||||||    
T  28023251 acaaaacaccttctgatattgtttcagagacatatgtggcatatttca 28023298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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