View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11557A_low_82 (Length: 350)

Name: NF11557A_low_82
Description: NF11557A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11557A_low_82
NF11557A_low_82
[»] chr1 (7 HSPs)
chr1 (1-338)||(7930371-7930708)
chr1 (103-156)||(26299298-26299350)
chr1 (77-148)||(28533671-28533741)
chr1 (87-146)||(33560868-33560926)
chr1 (82-148)||(28090702-28090767)
chr1 (82-148)||(51584953-51585018)
chr1 (103-148)||(4029352-4029396)
[»] chr3 (6 HSPs)
chr3 (232-330)||(53079825-53079923)
chr3 (82-148)||(659734-659799)
chr3 (82-148)||(52139009-52139074)
chr3 (103-148)||(19676089-19676133)
chr3 (87-148)||(52927856-52927916)
chr3 (103-139)||(1512054-1512090)
[»] chr6 (5 HSPs)
chr6 (82-148)||(21089606-21089671)
chr6 (87-148)||(12119650-12119711)
chr6 (82-148)||(34513-34578)
chr6 (82-148)||(4245880-4245945)
chr6 (103-148)||(3206467-3206511)
[»] chr5 (6 HSPs)
chr5 (87-148)||(8081971-8082032)
chr5 (103-148)||(16913890-16913935)
chr5 (88-148)||(7359269-7359328)
chr5 (82-148)||(18855816-18855881)
chr5 (89-145)||(5987732-5987787)
chr5 (88-148)||(7678692-7678751)
[»] chr2 (4 HSPs)
chr2 (82-148)||(11992116-11992181)
chr2 (82-148)||(18959120-18959185)
chr2 (82-148)||(9531608-9531673)
chr2 (103-139)||(23354109-23354145)
[»] chr8 (9 HSPs)
chr8 (82-124)||(25117494-25117536)
chr8 (82-148)||(14459104-14459170)
chr8 (82-148)||(18473980-18474045)
chr8 (82-148)||(35914609-35914674)
chr8 (87-148)||(18741846-18741906)
chr8 (87-148)||(18746810-18746870)
chr8 (103-148)||(44047540-44047584)
chr8 (103-148)||(45041324-45041368)
chr8 (100-148)||(39953272-39953319)
[»] chr4 (8 HSPs)
chr4 (82-156)||(35690480-35690553)
chr4 (88-145)||(310849-310906)
chr4 (102-157)||(40018188-40018242)
chr4 (82-148)||(49686902-49686967)
chr4 (103-148)||(15665331-15665375)
chr4 (103-148)||(23906305-23906349)
chr4 (103-156)||(27450180-27450232)
chr4 (88-140)||(1380585-1380636)
[»] chr7 (6 HSPs)
chr7 (82-148)||(28541951-28542017)
chr7 (82-148)||(36101785-36101850)
chr7 (82-148)||(40008439-40008504)
chr7 (102-148)||(45841004-45841049)
chr7 (103-156)||(48515505-48515557)
chr7 (80-124)||(22174207-22174251)
[»] scaffold0491 (1 HSPs)
scaffold0491 (87-148)||(3651-3711)


Alignment Details
Target: chr1 (Bit Score: 334; Significance: 0; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 1 - 338
Target Start/End: Complemental strand, 7930708 - 7930371
Alignment:
Q  1 atcctttcttacctgggcgcttgtgtatgtttcacactctccaattttttcgaatctatatggtgataatgattagcattgtgatggaacattatgacat 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7930708 atcctttcttacctgggcgcttgtgtatgtttcacactctccaattttttcgaatctatatggtgataatgattagcattgtgatggaacattatgacat 7930609  T
Q  101 tgtttgatccatgtagctgacccccacttagtggaataagacttggtttctgttgtgtctggtttaatgattagcattgtggtatttgaaatttaatgat 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7930608 tgtttgatccatgtagctgacccccacttagtggaataagacttggtttctgttgtgtctggtttaatgattagcattgtggtatttgaaatttaatgat 7930509  T
Q  201 tttatttgtcctttggtgtaatggcaggagtgtttttggctatgcctatccagcgtatgaatgctataaagtagttgaaaagaataagccggaaattgaa 300  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  7930508 tttatttgtcctttggtgtaatggcaggagtgtttttggctatgcctatccagcgtatgaatgctataaagtagttgaaaagaataagccagaaattgaa 7930409  T
Q  301 caacttcgattttggtgccagtattggtatgcaatatt 338  Q
    ||||||||||||||||||||||||||||||||||||||    
T  7930408 caacttcgattttggtgccagtattggtatgcaatatt 7930371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 103 - 156
Target Start/End: Original strand, 26299298 - 26299350
Alignment:
Q  103 tttgatccatgtagctgacccccacttagtggaataagacttggtttctgttgt 156  Q
    ||||||||||||||| |||||| ||||||||| ||||||||||||| |||||||    
T  26299298 tttgatccatgtagccgacccc-acttagtgggataagacttggttgctgttgt 26299350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 77 - 148
Target Start/End: Original strand, 28533671 - 28533741
Alignment:
Q  77 cattgtgatggaacattatgacattgtttgatccatgtagctgacccccacttagtggaataagacttggtt 148  Q
    |||| |||| ||||| |||||| |  ||||||||||||||| |||||| ||||||||| |||||||||||||    
T  28533671 cattatgatagaacactatgacgtcatttgatccatgtagccgacccc-acttagtgggataagacttggtt 28533741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 87 - 146
Target Start/End: Complemental strand, 33560926 - 33560868
Alignment:
Q  87 gaacattatgacattgtttgatccatgtagctgacccccacttagtggaataagacttgg 146  Q
    |||||||||||||||||||||||||||||||  | ||| ||||||||| ||||| |||||    
T  33560926 gaacattatgacattgtttgatccatgtagc-caaccctacttagtgggataaggcttgg 33560868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 82 - 148
Target Start/End: Complemental strand, 28090767 - 28090702
Alignment:
Q  82 tgatggaacattatgacattgtttgatccatgtagctgacccccacttagtggaataagacttggtt 148  Q
    |||| |||||||||| | |  ||||||||||||||| |||||| ||||||||| |||||||||||||    
T  28090767 tgatagaacattatggcgtaatttgatccatgtagccgacccc-acttagtgggataagacttggtt 28090702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 82 - 148
Target Start/End: Original strand, 51584953 - 51585018
Alignment:
Q  82 tgatggaacattatgacattgtttgatccatgtagctgacccccacttagtggaataagacttggtt 148  Q
    |||| ||||| |||||||||||||||| |||||||| || ||||||||||| | ||||| |||||||    
T  51584953 tgatagaacactatgacattgtttgattcatgtagcaga-ccccacttagtaggataaggcttggtt 51585018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 103 - 148
Target Start/End: Original strand, 4029352 - 4029396
Alignment:
Q  103 tttgatccatgtagctgacccccacttagtggaataagacttggtt 148  Q
    ||||||||||||||| |||||| ||||||||| |||||||||||||    
T  4029352 tttgatccatgtagccgacccc-acttagtgggataagacttggtt 4029396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 63; Significance: 2e-27; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 232 - 330
Target Start/End: Original strand, 53079825 - 53079923
Alignment:
Q  232 gtttttggctatgcctatccagcgtatgaatgctataaagtagttgaaaagaataagccggaaattgaacaacttcgattttggtgccagtattggtat 330  Q
    |||||||| ||||| || ||||| |||||||||||||||| |||||||||||||| ||||||||||||||| || || |||||||||||||||||||||    
T  53079825 gtttttggttatgcttacccagcatatgaatgctataaagcagttgaaaagaataggccggaaattgaacagctacgcttttggtgccagtattggtat 53079923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 82 - 148
Target Start/End: Original strand, 659734 - 659799
Alignment:
Q  82 tgatggaacattatgacattgtttgatccatgtagctgacccccacttagtggaataagacttggtt 148  Q
    |||| |||||||||| || ||||||||||||||||| || |||||||||||||  |||| |||||||    
T  659734 tgatagaacattatggcagtgtttgatccatgtagccga-ccccacttagtggggtaaggcttggtt 659799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 82 - 148
Target Start/End: Original strand, 52139009 - 52139074
Alignment:
Q  82 tgatggaacattatgacattgtttgatccatgtagctgacccccacttagtggaataagacttggtt 148  Q
    |||| ||||| |||||| || ||||||||||||||| || ||||||||||||| ||||| |||||||    
T  52139009 tgatagaacactatgacgttatttgatccatgtagccga-ccccacttagtgggataaggcttggtt 52139074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 103 - 148
Target Start/End: Complemental strand, 19676133 - 19676089
Alignment:
Q  103 tttgatccatgtagctgacccccacttagtggaataagacttggtt 148  Q
    |||||||||||||||||| ||||||||||||| ||||| |||||||    
T  19676133 tttgatccatgtagctga-ccccacttagtgggataaggcttggtt 19676089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 87 - 148
Target Start/End: Complemental strand, 52927916 - 52927856
Alignment:
Q  87 gaacattatgacattgtttgatccatgtagctgacccccacttagtggaataagacttggtt 148  Q
    |||||||||| |||  ||||||||||||||| || ||||||||||||| ||||| |||||||    
T  52927916 gaacattatggcataatttgatccatgtagccga-ccccacttagtgggataaggcttggtt 52927856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 103 - 139
Target Start/End: Original strand, 1512054 - 1512090
Alignment:
Q  103 tttgatccatgtagctgacccccacttagtggaataa 139  Q
    ||||||||||||||| |||||||||||||||| ||||    
T  1512054 tttgatccatgtagccgacccccacttagtgggataa 1512090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 82 - 148
Target Start/End: Original strand, 21089606 - 21089671
Alignment:
Q  82 tgatggaacattatgacattgtttgatccatgtagctgacccccacttagtggaataagacttggtt 148  Q
    |||| |||||||||| |||||||||||||||||||||| |||||||||||||| ||||| |||||||    
T  21089606 tgatagaacattatggcattgtttgatccatgtagctg-cccccacttagtgggataaggcttggtt 21089671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 87 - 148
Target Start/End: Complemental strand, 12119711 - 12119650
Alignment:
Q  87 gaacattatgacattgtttgatccatgtagctgacccccacttagtggaataagacttggtt 148  Q
    |||||||||||| |  ||||||||||||||| |||||||||||||||| ||||| |||||||    
T  12119711 gaacattatgacgtcatttgatccatgtagccgacccccacttagtgggataaggcttggtt 12119650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 82 - 148
Target Start/End: Complemental strand, 34578 - 34513
Alignment:
Q  82 tgatggaacattatgacattgtttgatccatgtagctgacccccacttagtggaataagacttggtt 148  Q
    |||| |||||||||| | |  |||||||||||||||||||||| ||||||||| |||||||||||||    
T  34578 tgatagaacattatggcgtaatttgatccatgtagctgacccc-acttagtgggataagacttggtt 34513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 82 - 148
Target Start/End: Complemental strand, 4245945 - 4245880
Alignment:
Q  82 tgatggaacattatgacattgtttgatccatgtagctgacccccacttagtggaataagacttggtt 148  Q
    |||| |||||||||||||| |||||||||| ||||| || ||||||||||||| ||||| |||||||    
T  4245945 tgatagaacattatgacatcgtttgatccaagtagccga-ccccacttagtgggataaggcttggtt 4245880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 103 - 148
Target Start/End: Complemental strand, 3206511 - 3206467
Alignment:
Q  103 tttgatccatgtagctgacccccacttagtggaataagacttggtt 148  Q
    ||||||||||||||| |||||| ||||||||| |||||||||||||    
T  3206511 tttgatccatgtagccgacccc-acttagtgggataagacttggtt 3206467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 87 - 148
Target Start/End: Complemental strand, 8082032 - 8081971
Alignment:
Q  87 gaacattatgacattgtttgatccatgtagctgacccccacttagtggaataagacttggtt 148  Q
    ||||||||||||||  ||||||||||||||| |||||||||||||||| ||||| |||||||    
T  8082032 gaacattatgacatgatttgatccatgtagccgacccccacttagtgggataaggcttggtt 8081971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 103 - 148
Target Start/End: Complemental strand, 16913935 - 16913890
Alignment:
Q  103 tttgatccatgtagctgacccccacttagtggaataagacttggtt 148  Q
    ||||||||||||||| |||||||||||||||| ||||| |||||||    
T  16913935 tttgatccatgtagccgacccccacttagtgggataaggcttggtt 16913890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 88 - 148
Target Start/End: Complemental strand, 7359328 - 7359269
Alignment:
Q  88 aacattatgacattgtttgatccatgtagctgacccccacttagtggaataagacttggtt 148  Q
    ||||||||||| |  |||||||||||||||||| ||||||||||||| | |||||||||||    
T  7359328 aacattatgacgtaatttgatccatgtagctga-ccccacttagtgggacaagacttggtt 7359269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 82 - 148
Target Start/End: Original strand, 18855816 - 18855881
Alignment:
Q  82 tgatggaacattatgacattgtttgatccatgtagctgacccccacttagtggaataagacttggtt 148  Q
    |||| |||||||||  |||  ||||||||||||||| |||||| ||||||||| |||||||||||||    
T  18855816 tgatagaacattatagcataatttgatccatgtagccgacccc-acttagtgggataagacttggtt 18855881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 89 - 145
Target Start/End: Original strand, 5987732 - 5987787
Alignment:
Q  89 acattatgacattgtttgatccatgtagctgacccccacttagtggaataagacttg 145  Q
    |||||||||| |  ||||||| ||||||| |||||| ||||||||||||||||||||    
T  5987732 acattatgacgtaatttgatcaatgtagccgacccc-acttagtggaataagacttg 5987787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 88 - 148
Target Start/End: Original strand, 7678692 - 7678751
Alignment:
Q  88 aacattatgacattgtttgatccatgtagctgacccccacttagtggaataagacttggtt 148  Q
    ||||||||||  | |||||||||||||||| || ||||||||||||| |||| ||||||||    
T  7678692 aacattatgaggtagtttgatccatgtagccga-ccccacttagtgggataaaacttggtt 7678751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 82 - 148
Target Start/End: Complemental strand, 11992181 - 11992116
Alignment:
Q  82 tgatggaacattatgacattgtttgatccatgtagctgacccccacttagtggaataagacttggtt 148  Q
    |||| |||||||||| | || |||||||||||||||||| ||||||||||||||||||| |||||||    
T  11992181 tgatagaacattatggcgttatttgatccatgtagctga-ccccacttagtggaataaggcttggtt 11992116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 82 - 148
Target Start/End: Original strand, 18959120 - 18959185
Alignment:
Q  82 tgatggaacattatgacattgtttgatccatgtagctgacccccacttagtggaataagacttggtt 148  Q
    |||| |||||||||| |||  |||||||||||||||||| ||||||||||||| ||||| |||||||    
T  18959120 tgatagaacattatggcataatttgatccatgtagctga-ccccacttagtgggataaggcttggtt 18959185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 82 - 148
Target Start/End: Complemental strand, 9531673 - 9531608
Alignment:
Q  82 tgatggaacattatgacattgtttgatccatgtagctgacccccacttagtggaataagacttggtt 148  Q
    ||||||||||||||| | |  ||||||||||||||| || ||||||||||||| ||||| |||||||    
T  9531673 tgatggaacattatggcgtaatttgatccatgtagccga-ccccacttagtgggataaggcttggtt 9531608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 103 - 139
Target Start/End: Original strand, 23354109 - 23354145
Alignment:
Q  103 tttgatccatgtagctgacccccacttagtggaataa 139  Q
    ||||||||||||||| |||||||||||||||| ||||    
T  23354109 tttgatccatgtagccgacccccacttagtgggataa 23354145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 35; Significance: 0.0000000001; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 82 - 124
Target Start/End: Original strand, 25117494 - 25117536
Alignment:
Q  82 tgatggaacattatgacattgtttgatccatgtagctgacccc 124  Q
    |||| ||||||||||||||||||||||||||||||| ||||||    
T  25117494 tgatagaacattatgacattgtttgatccatgtagcagacccc 25117536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 82 - 148
Target Start/End: Original strand, 14459104 - 14459170
Alignment:
Q  82 tgatggaacattatgacattgtttgatccatgtagctgacccccacttagtggaataagacttggtt 148  Q
    |||||||||||||||   |  ||||||||||||||| ||||||||||| |||| ||||| |||||||    
T  14459104 tgatggaacattatggtgtaatttgatccatgtagccgacccccactttgtgggataagccttggtt 14459170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 82 - 148
Target Start/End: Complemental strand, 18474045 - 18473980
Alignment:
Q  82 tgatggaacattatgacattgtttgatccatgtagctgacccccacttagtggaataagacttggtt 148  Q
    |||| |||||||||||| | ||||||| |||||||| ||| || ||||||||| |||||||||||||    
T  18474045 tgatagaacattatgacttcgtttgattcatgtagccgacacc-acttagtgggataagacttggtt 18473980  T

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Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 82 - 148
Target Start/End: Complemental strand, 35914674 - 35914609
Alignment:
Q  82 tgatggaacattatgacattgtttgatccatgtagctgacccccacttagtggaataagacttggtt 148  Q
    |||| |||||||||| | |  |||||||||||||||||| ||||||||||||  |||||||||||||    
T  35914674 tgatagaacattatggcgtaatttgatccatgtagctga-ccccacttagtgagataagacttggtt 35914609  T

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Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 87 - 148
Target Start/End: Original strand, 18741846 - 18741906
Alignment:
Q  87 gaacattatgacattgtttgatccatgtagctgacccccacttagtggaataagacttggtt 148  Q
    |||||||||||| |  ||||||||| ||||| |||||| ||||||||| |||||||||||||    
T  18741846 gaacattatgacgtaatttgatccaagtagccgacccc-acttagtgggataagacttggtt 18741906  T

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Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 87 - 148
Target Start/End: Original strand, 18746810 - 18746870
Alignment:
Q  87 gaacattatgacattgtttgatccatgtagctgacccccacttagtggaataagacttggtt 148  Q
    |||||||||||| |  ||||||||| ||||| |||||| ||||||||| |||||||||||||    
T  18746810 gaacattatgacgtaatttgatccaagtagccgacccc-acttagtgggataagacttggtt 18746870  T

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Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 103 - 148
Target Start/End: Complemental strand, 44047584 - 44047540
Alignment:
Q  103 tttgatccatgtagctgacccccacttagtggaataagacttggtt 148  Q
    |||||||||||||||||| ||||||||||||| ||||| |||||||    
T  44047584 tttgatccatgtagctga-ccccacttagtgggataaggcttggtt 44047540  T

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Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 103 - 148
Target Start/End: Complemental strand, 45041368 - 45041324
Alignment:
Q  103 tttgatccatgtagctgacccccacttagtggaataagacttggtt 148  Q
    |||||||||||||||||| ||||||||||||| ||||| |||||||    
T  45041368 tttgatccatgtagctga-ccccacttagtgggataaggcttggtt 45041324  T

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Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 100 - 148
Target Start/End: Complemental strand, 39953319 - 39953272
Alignment:
Q  100 ttgtttgatccatgtagctgacccccacttagtggaataagacttggtt 148  Q
    ||||||||| |||||||| |||||| ||||||||| |||||||||||||    
T  39953319 ttgtttgattcatgtagccgacccc-acttagtgggataagacttggtt 39953272  T

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Target: chr4 (Bit Score: 35; Significance: 0.0000000001; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 82 - 156
Target Start/End: Original strand, 35690480 - 35690553
Alignment:
Q  82 tgatggaacattatgacattgtttgatccatgtagctgacccccacttagtggaataagacttggtttctgttgt 156  Q
    |||| |||||||||| | |  ||||||||||||||| |||||| ||||||||| |||||||||||||| ||||||    
T  35690480 tgatagaacattatggcgtaatttgatccatgtagccgacccc-acttagtgggataagacttggtttttgttgt 35690553  T

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Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 88 - 145
Target Start/End: Complemental strand, 310906 - 310849
Alignment:
Q  88 aacattatgacattgtttgatccatgtagctgacccccacttagtggaataagacttg 145  Q
    |||||| || |||||||||||||||||||| |||||||||||| | | ||||||||||    
T  310906 aacattgtgtcattgtttgatccatgtagccgacccccacttacttggataagacttg 310849  T

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Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 102 - 157
Target Start/End: Complemental strand, 40018242 - 40018188
Alignment:
Q  102 gtttgatccatgtagctgacccccacttagtggaataagacttggtttctgttgtg 157  Q
    |||||||||||||||| |||||| |||||||||||||| ||||| || ||||||||    
T  40018242 gtttgatccatgtagccgacccc-acttagtggaataaaacttgtttgctgttgtg 40018188  T

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Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 82 - 148
Target Start/End: Original strand, 49686902 - 49686967
Alignment:
Q  82 tgatggaacattatgacattgtttgatccatgtagctgacccccacttagtggaataagacttggtt 148  Q
    |||||||| |||||| | | |||||| ||||||||| |||||| ||||||||| |||||||||||||    
T  49686902 tgatggaatattatggcgtcgtttgaaccatgtagccgacccc-acttagtgggataagacttggtt 49686967  T

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Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 103 - 148
Target Start/End: Original strand, 15665331 - 15665375
Alignment:
Q  103 tttgatccatgtagctgacccccacttagtggaataagacttggtt 148  Q
    |||||||||||||||||| ||||||||||||| ||||| |||||||    
T  15665331 tttgatccatgtagctga-ccccacttagtgggataaggcttggtt 15665375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 103 - 148
Target Start/End: Complemental strand, 23906349 - 23906305
Alignment:
Q  103 tttgatccatgtagctgacccccacttagtggaataagacttggtt 148  Q
    |||||||||||||||||| ||||||||||||| ||||| |||||||    
T  23906349 tttgatccatgtagctga-ccccacttagtgggataaggcttggtt 23906305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 103 - 156
Target Start/End: Complemental strand, 27450232 - 27450180
Alignment:
Q  103 tttgatccatgtagctgacccccacttagtggaataagacttggtttctgttgt 156  Q
    ||||||||||||||| |||||| ||||||||| ||||| ||||||| |||||||    
T  27450232 tttgatccatgtagccgacccc-acttagtgggataaggcttggttgctgttgt 27450180  T

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Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 88 - 140
Target Start/End: Original strand, 1380585 - 1380636
Alignment:
Q  88 aacattatgacattgtttgatccatgtagctgacccccacttagtggaataag 140  Q
    ||||||||||| |||||||||||||||||| || || |||||||||| |||||    
T  1380585 aacattatgactttgtttgatccatgtagccga-cctcacttagtgggataag 1380636  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000003; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 82 - 148
Target Start/End: Complemental strand, 28542017 - 28541951
Alignment:
Q  82 tgatggaacattatgacattgtttgatccatgtagctgacccccacttagtggaataagacttggtt 148  Q
    |||| |||||| ||| ||| ||||||||| |||||| |||||||||||||| | ||||| |||||||    
T  28542017 tgatagaacatcatggcatagtttgatccgtgtagccgacccccacttagttggataaggcttggtt 28541951  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 82 - 148
Target Start/End: Complemental strand, 36101850 - 36101785
Alignment:
Q  82 tgatggaacattatgacattgtttgatccatgtagctgacccccacttagtggaataagacttggtt 148  Q
    |||| |||||||||||| |  |||||||||||||| ||| ||||||||||||| ||||| |||||||    
T  36101850 tgatagaacattatgacgtaatttgatccatgtagttga-ccccacttagtgggataaggcttggtt 36101785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 82 - 148
Target Start/End: Complemental strand, 40008504 - 40008439
Alignment:
Q  82 tgatggaacattatgacattgtttgatccatgtagctgacccccacttagtggaataagacttggtt 148  Q
    |||| |||||||||| | ||||||||||||||||||||| || |||||| ||  |||||||||||||    
T  40008504 tgatagaacattatgtcgttgtttgatccatgtagctga-cctcacttaatgagataagacttggtt 40008439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 102 - 148
Target Start/End: Complemental strand, 45841049 - 45841004
Alignment:
Q  102 gtttgatccatgtagctgacccccacttagtggaataagacttggtt 148  Q
    ||||||||||||||||||| ||||| ||||||| |||||||||||||    
T  45841049 gtttgatccatgtagctga-ccccaattagtggtataagacttggtt 45841004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 103 - 156
Target Start/End: Original strand, 48515505 - 48515557
Alignment:
Q  103 tttgatccatgtagctgacccccacttagtggaataagacttggtttctgttgt 156  Q
    |||||||| |||||| |||||| ||||||||| |||||||||||||| ||||||    
T  48515505 tttgatccgtgtagccgacccc-acttagtgggataagacttggtttttgttgt 48515557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 80 - 124
Target Start/End: Original strand, 22174207 - 22174251
Alignment:
Q  80 tgtgatggaacattatgacattgtttgatccatgtagctgacccc 124  Q
    |||||| |||||||||| | |||||||||||||||||| ||||||    
T  22174207 tgtgatagaacattatggcgttgtttgatccatgtagccgacccc 22174251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0491 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0491
Description:

Target: scaffold0491; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 87 - 148
Target Start/End: Original strand, 3651 - 3711
Alignment:
Q  87 gaacattatgacattgtttgatccatgtagctgacccccacttagtggaataagacttggtt 148  Q
    |||||||||||| |  ||||||||| ||||| |||||| ||||||||| |||||||||||||    
T  3651 gaacattatgacgtaatttgatccaagtagccgacccc-acttagtgggataagacttggtt 3711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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