View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11557A_low_83 (Length: 350)

Name: NF11557A_low_83
Description: NF11557A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11557A_low_83
NF11557A_low_83
[»] chr6 (26 HSPs)
chr6 (12-344)||(4564416-4564748)
chr6 (12-273)||(4592936-4593199)
chr6 (13-248)||(4617728-4617963)
chr6 (22-248)||(4602504-4602730)
chr6 (171-248)||(4506718-4506795)
chr6 (166-248)||(3172597-3172679)
chr6 (160-248)||(4481543-4481631)
chr6 (160-248)||(4517171-4517259)
chr6 (171-248)||(4514315-4514392)
chr6 (176-248)||(4489555-4489627)
chr6 (175-248)||(4461988-4462061)
chr6 (159-248)||(4470652-4470741)
chr6 (159-250)||(4557974-4558065)
chr6 (159-246)||(4586485-4586572)
chr6 (168-250)||(4571830-4571912)
chr6 (159-244)||(4561353-4561438)
chr6 (159-244)||(4575157-4575242)
chr6 (211-247)||(4266358-4266394)
chr6 (17-68)||(4299195-4299246)
chr6 (159-250)||(4612910-4613001)
chr6 (171-248)||(4484033-4484111)
chr6 (184-250)||(4580915-4580981)
chr6 (19-68)||(4517030-4517079)
chr6 (19-68)||(4568753-4568802)
chr6 (170-242)||(4259354-4259426)
chr6 (168-224)||(4599028-4599084)
[»] scaffold0199 (1 HSPs)
scaffold0199 (26-248)||(183-405)
[»] chr8 (4 HSPs)
chr8 (26-248)||(1674946-1675168)
chr8 (180-248)||(20863037-20863105)
chr8 (17-68)||(20863217-20863268)
chr8 (184-246)||(16685482-16685544)
[»] chr3 (1 HSPs)
chr3 (12-243)||(1281819-1282050)
[»] chr5 (1 HSPs)
chr5 (211-246)||(24103903-24103938)
[»] scaffold0288 (1 HSPs)
scaffold0288 (160-242)||(2918-3000)


Alignment Details
Target: chr6 (Bit Score: 293; Significance: 1e-164; HSPs: 26)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 12 - 344
Target Start/End: Original strand, 4564416 - 4564748
Alignment:
Q  12 agaggagagagcatttattacatcactctcaagttcattgaaagtattcaaaacaattgtagagtctccaggaactttgtcagccgcatcaattacaaag 111  Q
    ||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||    
T  4564416 agaggagagagcatttattacatcactctaaagttcatggaaagtattcaaaacaattgtagagtctccaagaactttatcagccgcatcaattacaaag 4564515  T
Q  112 tctaacataatatcatttgggtctgttgtcctgatactgtcaaagatatcctttaatcgaaagtttttcaaacctggaatccaatctacattagtttcca 211  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  4564516 tctaacataatatcatttggatctgttgtcctgatactgtcaaagatatcctttaaccgaaagtttttcaaacctggaatccaatctacattagtttcca 4564615  T
Q  212 aatatccatttgttagatagctctcatctgcatatcaaaagtatcagttaatatcttgaaggttatacatacatccgtcaatacatgagtattttgtttt 311  Q
    |||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||    
T  4564616 aatatccatttgttagatagctctgatctgcatatcaaatgtatcagttaatatcttgaaggttatacatacatccgtacatacatgagtattttgtttt 4564715  T
Q  312 cgacaaaaacatacatatataataaggtattat 344  Q
    |||||||||||||||||||||||||||||||||    
T  4564716 cgacaaaaacatacatatataataaggtattat 4564748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 161; E-Value: 8e-86
Query Start/End: Original strand, 12 - 273
Target Start/End: Original strand, 4592936 - 4593199
Alignment:
Q  12 agaggagagagcatttattacatcactctcaagttcattgaaagtattcaaaacaattgtagagtctccaggaactttgtcagccgcatcaattacaaag 111  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||| |  | || |||| |||||| ||||||||||||||    
T  4592936 agaggagagagcatttattacatcactctcaagttcattgaaagtattcaaaataatagtagagtttttatgatctttatcagccacatcaattacaaag 4593035  T
Q  112 tctaacataatatcatttgggtctgttgtcctgatactgtcaaagatatcctttaatcgaaagtttttcaaacctggaatccaatctacattagtttcca 211  Q
    | |||||||||||||||||| |||||||||||||||  ||||   || ||||| || |||||||||||||||||||||||||||||||| ||||||||||    
T  4593036 tttaacataatatcatttggatctgttgtcctgatatagtcagcaatgtccttcaaccgaaagtttttcaaacctggaatccaatctactttagtttcca 4593135  T
Q  212 aatatccatttgttagatagctctcatctgcatatcaaaagtatc--agttaatatcttgaagg 273  Q
    ||||||||||||||||||| ||||||||||||||||||||||| |  |||||||| ||||||||    
T  4593136 aatatccatttgttagataactctcatctgcatatcaaaagtagcaaagttaatagcttgaagg 4593199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 13 - 248
Target Start/End: Original strand, 4617728 - 4617963
Alignment:
Q  13 gaggagagagcatttattacatcactctcaagttcattgaaagtattcaaaacaattgtagagtctccaggaactttgtcagccgcatcaattacaaagt 112  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||| ||||     ||||   || ||  | || || |  || |    
T  4617728 gaggagagagcatttattacatcactctcaagttcattgaaagtattcaaaagaatagtagtgtctttgttaactcgatctgcaacttctataaagaatt 4617827  T
Q  113 ctaacataatatcatttgggtctgttgtcctgatactgtcaaagatatcctttaatcgaaagtttttcaaacctggaatccaatctacattagtttccaa 212  Q
    ||||||||||||||||||| | |||||||||||||  ||||| ||| ||||| || ||||||||||||||||| |||||||||||||| |||||||||||    
T  4617828 ctaacataatatcatttggatttgttgtcctgataaagtcaacgatgtccttcaaccgaaagtttttcaaaccgggaatccaatctactttagtttccaa 4617927  T
Q  213 atatccatttgttagatagctctcatctgcatatca 248  Q
    | |||||||||||||||| |||||||||||||||||    
T  4617928 acatccatttgttagataactctcatctgcatatca 4617963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 22 - 248
Target Start/End: Original strand, 4602504 - 4602730
Alignment:
Q  22 gcatttattacatcactctcaagttcattgaaagtattcaaaacaattgtagagtctccaggaactttgtcagccgcatcaattacaaagtctaacataa 121  Q
    ||||| |||||||||||||||||||||||| |||||||||||| ||| |||||||||| |  || | | || ||    ||||  |  || |||| |||||    
T  4602504 gcattcattacatcactctcaagttcattgtaagtattcaaaagaatagtagagtctctattaaatctatctgcaatttcaaaaaagaattctaccataa 4602603  T
Q  122 tatcatttgggtctgttgtcctgatactgtcaaagatatcctttaatcgaaagtttttcaaacctggaatccaatctacattagtttccaaatatccatt 221  Q
    |||||||||| |||||||||||||||  |||||  || ||||| || |||||||||||||||||||||||||||||||| || ||||||||| |||||||    
T  4602604 tatcatttggatctgttgtcctgatatagtcaagaatgtccttcaaccgaaagtttttcaaacctggaatccaatctacttttgtttccaaacatccatt 4602703  T
Q  222 tgttagatagctctcatctgcatatca 248  Q
    ||||||||| || ||||||||||||||    
T  4602704 tgttagataactatcatctgcatatca 4602730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 171 - 248
Target Start/End: Original strand, 4506718 - 4506795
Alignment:
Q  171 aaagtttttcaaacctggaatccaatctacattagtttccaaatatccatttgttagatagctctcatctgcatatca 248  Q
    ||||||| |||||||||||||||| ||||| ||||| ||||||||||||||||||||||| |||||||||||||||||    
T  4506718 aaagtttctcaaacctggaatccagtctaccttagtgtccaaatatccatttgttagataactctcatctgcatatca 4506795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 166 - 248
Target Start/End: Original strand, 3172597 - 3172679
Alignment:
Q  166 aatcgaaagtttttcaaacctggaatccaatctacattagtttccaaatatccatttgttagatagctctcatctgcatatca 248  Q
    |||| |||||||||||||||||||||||| || ||  |||| ||||||||||||||||||  ||| |||||||||||||||||    
T  3172597 aatctaaagtttttcaaacctggaatccagtcaactatagtgtccaaatatccatttgtttcataactctcatctgcatatca 3172679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 160 - 248
Target Start/End: Original strand, 4481543 - 4481631
Alignment:
Q  160 tcctttaatcgaaagtttttcaaacctggaatccaatctacattagtttccaaatatccatttgttagatagctctcatctgcatatca 248  Q
    ||||| |||| |||||||||||||||||||||||| |||||  | |  ||||||||||||| ||||| ||| |||||||||||||||||    
T  4481543 tccttcaatctaaagtttttcaaacctggaatccagtctactgttgcgtccaaatatccatctgttaaataactctcatctgcatatca 4481631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 160 - 248
Target Start/End: Original strand, 4517171 - 4517259
Alignment:
Q  160 tcctttaatcgaaagtttttcaaacctggaatccaatctacattagtttccaaatatccatttgttagatagctctcatctgcatatca 248  Q
    ||||||| || |||||||  ||||||||||||||| || || ||||| ||||||||||||||||| | ||| |||||||||||||||||    
T  4517171 tcctttagtctaaagtttcccaaacctggaatccagtcaactttagtgtccaaatatccatttgtcaaataactctcatctgcatatca 4517259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 171 - 248
Target Start/End: Complemental strand, 4514392 - 4514315
Alignment:
Q  171 aaagtttttcaaacctggaatccaatctacattagtttccaaatatccatttgttagatagctctcatctgcatatca 248  Q
    |||||||  ||||||||||||||| || || ||||| ||||||||||||||||| | ||| |||||||||||||||||    
T  4514392 aaagtttcgcaaacctggaatccagtcaactttagtgtccaaatatccatttgtcaaataactctcatctgcatatca 4514315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 176 - 248
Target Start/End: Complemental strand, 4489627 - 4489555
Alignment:
Q  176 ttttcaaacctggaatccaatctacattagtttccaaatatccatttgttagatagctctcatctgcatatca 248  Q
    ||||||||||||||||||| || || ||||| ||||||| ||||| ||||||||  |||||||||||||||||    
T  4489627 ttttcaaacctggaatccattcaactttagtgtccaaatttccatctgttagattactctcatctgcatatca 4489555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 175 - 248
Target Start/End: Original strand, 4461988 - 4462061
Alignment:
Q  175 tttttcaaacctggaatccaatctacattagtttccaaatatccatttgttagatagctctcatctgcatatca 248  Q
    |||||||||||||||||||| || || | ||| || |||||||||| |||||||||  ||||||||||||||||    
T  4461988 tttttcaaacctggaatccagtcaacttcagtgtctaaatatccatctgttagataaatctcatctgcatatca 4462061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 159 - 248
Target Start/End: Original strand, 4470652 - 4470741
Alignment:
Q  159 atcctttaatcgaaagtttttcaaacctggaatccaatctacattagtttccaaatatccatttgttagatagctctcatctgcatatca 248  Q
    |||||| ||||  ||||||||||||||||||||||| || || | | | || |||||||||| | ||||||| |||||||||||||||||    
T  4470652 atccttcaatctgaagtttttcaaacctggaatccagtcaacttcaatgtcgaaatatccatctattagataactctcatctgcatatca 4470741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 159 - 250
Target Start/End: Original strand, 4557974 - 4558065
Alignment:
Q  159 atcctttaatcgaaagtttttcaaacctggaatccaatctacattagtttccaaatatccatttgttagatagctctcatctgcatatcaaa 250  Q
    |||||| | ||||||||| | ||| |||||||| ||||| || ||||| ||||||||||| ||||| ||||| ||||||||| ||| |||||    
T  4557974 atccttcagtcgaaagttctgcaatcctggaatacaatccactttagtgtccaaatatccgtttgtcagataactctcatctacatgtcaaa 4558065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 159 - 246
Target Start/End: Original strand, 4586485 - 4586572
Alignment:
Q  159 atcctttaatcgaaagtttttcaaacctggaatccaatctacattagtttccaaatatccatttgttagatagctctcatctgcatat 246  Q
    |||||||| ||||||||| | ||| |||||||| || || || ||||| ||||||||||| ||||| ||||| |||| ||||||||||    
T  4586485 atcctttagtcgaaagttctccaatcctggaatacagtccactttagtgtccaaatatccgtttgtcagataactcttatctgcatat 4586572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 168 - 250
Target Start/End: Original strand, 4571830 - 4571912
Alignment:
Q  168 tcgaaagtttttcaaacctggaatccaatctacattagtttccaaatatccatttgttagatagctctcatctgcatatcaaa 250  Q
    ||||||||| ||||  ||||| || || || || ||||| ||||||||||| ||||| ||||| |||||||||||||||||||    
T  4571830 tcgaaagttcttcagtcctggcatacagtccactttagtgtccaaatatccgtttgtcagataactctcatctgcatatcaaa 4571912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 159 - 244
Target Start/End: Original strand, 4561353 - 4561438
Alignment:
Q  159 atcctttaatcgaaagtttttcaaacctggaatccaatctacattagtttccaaatatccatttgttagatagctctcatctgcat 244  Q
    |||||| ||||  ||||||||||||||||| ||||| || || || || |||| |||| ||||||||||||  |||||||||||||    
T  4561353 atccttcaatctgaagtttttcaaacctgggatccagtcaactttcgtgtccagatattcatttgttagatcactctcatctgcat 4561438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 159 - 244
Target Start/End: Original strand, 4575157 - 4575242
Alignment:
Q  159 atcctttaatcgaaagtttttcaaacctggaatccaatctacattagtttccaaatatccatttgttagatagctctcatctgcat 244  Q
    |||||| ||||  ||||||||||||||||| ||||| || |  || || ||||||||| ||||||||||||  |||||||||||||    
T  4575157 atccttcaatctgaagtttttcaaacctgggatccagtcaatttttgtgtccaaatattcatttgttagatcactctcatctgcat 4575242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 211 - 247
Target Start/End: Complemental strand, 4266394 - 4266358
Alignment:
Q  211 aaatatccatttgttagatagctctcatctgcatatc 247  Q
    |||||||||||||||||||| ||||||||||||||||    
T  4266394 aaatatccatttgttagataactctcatctgcatatc 4266358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 17 - 68
Target Start/End: Complemental strand, 4299246 - 4299195
Alignment:
Q  17 agagagcatttattacatcactctcaagttcattgaaagtattcaaaacaat 68  Q
    |||||||||| ||||||||||||||||||||||   ||||||| ||||||||    
T  4299246 agagagcattcattacatcactctcaagttcatcataagtattaaaaacaat 4299195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 159 - 250
Target Start/End: Complemental strand, 4613001 - 4612910
Alignment:
Q  159 atcctttaatcgaaagtttttcaaacctggaatccaatctacattagtttccaaatatccatttgttagatagctctcatctgcatatcaaa 250  Q
    |||||| | ||||||||| | ||| ||| |||| || || || ||||| ||||||||||| ||||| ||||| ||||||||||||| |||||    
T  4613001 atccttcagtcgaaagttctgcaatccttgaatacagtccactttagtatccaaatatccgtttgtcagataactctcatctgcatgtcaaa 4612910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 171 - 248
Target Start/End: Complemental strand, 4484111 - 4484033
Alignment:
Q  171 aaagtttttcaaacctggaatccaatctacattagtttccaaatatccatttg-ttagatagctctcatctgcatatca 248  Q
    ||||||||||||| |||||| ||| ||||| | ||| ||||||||| |||||| ||||||| |||| || |||||||||    
T  4484111 aaagtttttcaaatctggaacccagtctacttcagtgtccaaatatacatttgcttagataactcttatttgcatatca 4484033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 184 - 250
Target Start/End: Original strand, 4580915 - 4580981
Alignment:
Q  184 cctggaatccaatctacattagtttccaaatatccatttgttagatagctctcatctgcatatcaaa 250  Q
    |||||||| |||||||| ||||| ||||||||||| ||||| ||||| || ||||||| | ||||||    
T  4580915 cctggaatacaatctactttagtgtccaaatatccgtttgtgagataactgtcatctgtacatcaaa 4580981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 68
Target Start/End: Original strand, 4517030 - 4517079
Alignment:
Q  19 agagcatttattacatcactctcaagttcattgaaagtattcaaaacaat 68  Q
    |||||||||||||||||| ||||||||||||   ||||||| ||||||||    
T  4517030 agagcatttattacatcattctcaagttcatcagaagtattgaaaacaat 4517079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 68
Target Start/End: Original strand, 4568753 - 4568802
Alignment:
Q  19 agagcatttattacatcactctcaagttcattgaaagtattcaaaacaat 68  Q
    ||||| |||| |||||||||||||||||||||  ||||||| ||||||||    
T  4568753 agagcctttactacatcactctcaagttcattataagtattgaaaacaat 4568802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 170 - 242
Target Start/End: Complemental strand, 4259426 - 4259354
Alignment:
Q  170 gaaagtttttcaaacctggaatccaatctacattagtttccaaatatccatttgttagatagctctcatctgc 242  Q
    ||||||| ||||| || ||||  || ||||| || || |||| ||||||||||||||||||||||| ||||||    
T  4259426 gaaagttcttcaatccaggaacacagtctactttggtatccagatatccatttgttagatagctcttatctgc 4259354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 168 - 224
Target Start/End: Original strand, 4599028 - 4599084
Alignment:
Q  168 tcgaaagtttttcaaacctggaatccaatctacattagtttccaaatatccatttgt 224  Q
    ||||||||||| ||  || ||||| |||||||| ||||||||||||||||| |||||    
T  4599028 tcgaaagttttgcagtccaggaatacaatctactttagtttccaaatatccgtttgt 4599084  T

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Target: scaffold0199 (Bit Score: 131; Significance: 6e-68; HSPs: 1)
Name: scaffold0199
Description:

Target: scaffold0199; HSP #1
Raw Score: 131; E-Value: 6e-68
Query Start/End: Original strand, 26 - 248
Target Start/End: Original strand, 183 - 405
Alignment:
Q  26 ttattacatcactctcaagttcattgaaagtattcaaaacaattgtagagtctccaggaactttgtcagccgcatcaattacaaagtctaacataatatc 125  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||   ||||||| |||||  ||||||||| ||||||||||||||||||    
T  183 ttattacatcactctcaagttcattgaaagtattcaaaataattgtagagtctctgtgaactttatcagcgacatcaattaaaaagtctaacataatatc 282  T
Q  126 atttgggtctgttgtcctgatactgtcaaagatatcctttaatcgaaagtttttcaaacctggaatccaatctacattagtttccaaatatccatttgtt 225  Q
    |||||| || ||||| ||||||| |||||  | |||||| || |||||||||||||||||||||||||| || || || |||||||||||||||||||||    
T  283 atttggatccgttgttctgatacagtcaacaacatccttcaaccgaaagtttttcaaacctggaatccactcgacttttgtttccaaatatccatttgtt 382  T
Q  226 agatagctctcatctgcatatca 248  Q
    ||||  |||||||||||||||||    
T  383 agatgtctctcatctgcatatca 405  T

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Target: chr8 (Bit Score: 131; Significance: 6e-68; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 131; E-Value: 6e-68
Query Start/End: Original strand, 26 - 248
Target Start/End: Original strand, 1674946 - 1675168
Alignment:
Q  26 ttattacatcactctcaagttcattgaaagtattcaaaacaattgtagagtctccaggaactttgtcagccgcatcaattacaaagtctaacataatatc 125  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||   ||||||| |||||  ||||||||| ||||||||||||||||||    
T  1674946 ttattacatcactctcaagttcattgaaagtattcaaaataattgtagagtctctgtgaactttatcagcgacatcaattaaaaagtctaacataatatc 1675045  T
Q  126 atttgggtctgttgtcctgatactgtcaaagatatcctttaatcgaaagtttttcaaacctggaatccaatctacattagtttccaaatatccatttgtt 225  Q
    |||||| || ||||| ||||||| |||||  | |||||| || |||||||||||||||||||||||||| || || || |||||||||||||||||||||    
T  1675046 atttggatccgttgttctgatacagtcaacaacatccttcaaccgaaagtttttcaaacctggaatccactcgacttttgtttccaaatatccatttgtt 1675145  T
Q  226 agatagctctcatctgcatatca 248  Q
    ||||  |||||||||||||||||    
T  1675146 agatgtctctcatctgcatatca 1675168  T

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Target: chr8; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 180 - 248
Target Start/End: Complemental strand, 20863105 - 20863037
Alignment:
Q  180 caaacctggaatccaatctacattagtttccaaatatccatttgttagatagctctcatctgcatatca 248  Q
    |||||||||||||| ||| || ||||| ||||||||||||||||||||||| |||||||||| ||||||    
T  20863105 caaacctggaatccgatcaactttagtctccaaatatccatttgttagataactctcatctgtatatca 20863037  T

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Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 17 - 68
Target Start/End: Complemental strand, 20863268 - 20863217
Alignment:
Q  17 agagagcatttattacatcactctcaagttcattgaaagtattcaaaacaat 68  Q
    ||||| |||| || |||||||||||||| |||||||||||||| ||||||||    
T  20863268 agagaacattcataacatcactctcaagctcattgaaagtattgaaaacaat 20863217  T

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Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 184 - 246
Target Start/End: Complemental strand, 16685544 - 16685482
Alignment:
Q  184 cctggaatccaatctacattagtttccaaatatccatttgttagatagctctcatctgcatat 246  Q
    |||||||| || || || ||||| ||||||||||| ||||| ||||| |||||||||||||||    
T  16685544 cctggaatacagtccactttagtgtccaaatatccgtttgtcagataactctcatctgcatat 16685482  T

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Target: chr3 (Bit Score: 112; Significance: 1e-56; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 12 - 243
Target Start/End: Original strand, 1281819 - 1282050
Alignment:
Q  12 agaggagagagcatttattacatcactctcaagttcattgaaagtattcaaaacaattgtagagtctccaggaactttgtcagccgcatcaattacaaag 111  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||| |  |||| | || |||   ||||| |  ||     
T  1281819 agaggagagagcatttattacatcactctcaagttcattgaaagtattcaaaagaatagtagagtctctattaactctatctgccatttcaataaagaat 1281918  T
Q  112 tctaacataatatcatttgggtctgttgtcctgatactgtcaaagatatcctttaatcgaaagtttttcaaacctggaatccaatctacattagtttcca 211  Q
    |||||||||||||| ||| | ||| |||||||||||  |||||  |||||||| || || || |||||||||||||||||||||||||| || |||||||    
T  1281919 tctaacataatatcgtttcgatctcttgtcctgataaagtcaacaatatccttcaaccggaaatttttcaaacctggaatccaatctacttttgtttcca 1282018  T
Q  212 aatatccatttgttagatagctctcatctgca 243  Q
    ||||||||||||||||||| ||||||||||||    
T  1282019 aatatccatttgttagataactctcatctgca 1282050  T

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Target: chr5 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 211 - 246
Target Start/End: Original strand, 24103903 - 24103938
Alignment:
Q  211 aaatatccatttgttagatagctctcatctgcatat 246  Q
    |||||||||||||||||||| |||||||||||||||    
T  24103903 aaatatccatttgttagataactctcatctgcatat 24103938  T

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Target: scaffold0288 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0288
Description:

Target: scaffold0288; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 160 - 242
Target Start/End: Complemental strand, 3000 - 2918
Alignment:
Q  160 tcctttaatcgaaagtttttcaaacctggaatccaatctacattagtttccaaatatccatttgttagatagctctcatctgc 242  Q
    ||||||| |||||||||||||| ||| ||||| |||||||| ||  | |||||||||||| |||| | ||| || ||||||||    
T  3000 tcctttagtcgaaagtttttcatacccggaatacaatctactttgttgtccaaatatccacttgtcaaataactatcatctgc 2918  T

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