View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11557A_low_84 (Length: 350)
Name: NF11557A_low_84
Description: NF11557A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11557A_low_84 |
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Alignment Details
Target: chr1 (Bit Score: 182; Significance: 2e-98; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 4 - 316
Target Start/End: Original strand, 47251770 - 47252081
Alignment:
| Q |
4 |
attgagtttagcaaaattgattaaattctcacaactacctgaatcaatgtttaaatcgcgactaagagaaatatttatatatttaatgtctgacaatata |
103 |
Q |
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| T |
47251770 |
attgagtttagcaaaattgattaaattctcacaactatctgaatcaatgtttgaatcgcgactaagagaaatatctatatatttaatgtctgacaatata |
47251869 |
T |
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| Q |
104 |
cgtctcgattaagattactttcaatagattgaacatatataagnnnnnnnnnnnnnnnncatttaagattaatttcgatagattgaacatatatagnnnn |
203 |
Q |
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| T |
47251870 |
cgtctcgattaagattactttcgatagattgaacatatataagaaacaaaaacaaaaaaca-ttaagattactttcgatagattgaacatatataaaaaa |
47251968 |
T |
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| Q |
204 |
nnnnnnnnnnnnncatgatactcatacacctttattcttattctgaaaattgcataaggttttagtaaccattttgttttgaaggaaaagttttagatgt |
303 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47251969 |
caaaaacaaaaaacatgatactcatacacctttattcttattctgaaaattgcataaggttttagtaaccattttgttttgaaggaaaagttttagatgt |
47252068 |
T |
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| Q |
304 |
gtataggaattat |
316 |
Q |
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| T |
47252069 |
gtataggaattat |
47252081 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 311 - 344
Target Start/End: Original strand, 47252575 - 47252608
Alignment:
| Q |
311 |
aattataaataataacaaggatgcatggtcggac |
344 |
Q |
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|||||||||||||||||||||||||||||||||| |
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| T |
47252575 |
aattataaataataacaaggatgcatggtcggac |
47252608 |
T |
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