View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11557A_low_88 (Length: 345)

Name: NF11557A_low_88
Description: NF11557A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11557A_low_88
NF11557A_low_88
[»] chr4 (1 HSPs)
chr4 (22-329)||(54396906-54397213)
[»] chr7 (3 HSPs)
chr7 (148-287)||(39986953-39987092)
chr7 (133-185)||(17261366-17261418)
chr7 (133-173)||(17269074-17269114)
[»] chr2 (7 HSPs)
chr2 (102-287)||(17647455-17647640)
chr2 (102-287)||(17666109-17666294)
chr2 (102-287)||(17716113-17716298)
chr2 (102-287)||(17621371-17621556)
chr2 (102-287)||(17703469-17703654)
chr2 (102-287)||(17717374-17717559)
chr2 (133-185)||(16656676-16656728)


Alignment Details
Target: chr4 (Bit Score: 300; Significance: 1e-169; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 300; E-Value: 1e-169
Query Start/End: Original strand, 22 - 329
Target Start/End: Original strand, 54396906 - 54397213
Alignment:
Q  22 acgatcataggtttttcagcgggacctggaacgactttaaacggccatagtttcatgtcgttttgaactgattcatcggagaatctacgaccaattaaac 121  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  54396906 acgatcataggtttttcagcgggacctggaacgactttaaacggccatagtttcatgtcgttttgaactgattcatcggagaatctacgaccaattaaac 54397005  T
Q  122 gcttagcatcgaagacggtgttctgtgggttcatggcaacttgattcttagcagcatcgccgatgagtcgttcggtatcggtgaatgccacgtaggatgg 221  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  54397006 gcttagcatcgaagacggtgttctgtggattcatggcaacttgattcttagcagcatcgccgatgagtcgttcggtatcggtgaatgccacgtaggatgg 54397105  T
Q  222 tgttgtgcggttgccttggtcgttagggatgatttcgacgcggtcgttttgccatacaccgacgcagctgtaggttgtgcctaggtctatgccaatggat 321  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  54397106 tgttgtgcggttgccttggtcgttagggatgatttcgacgcggtcgttttgccatacaccgacgcagctgtaggttgtgcctaggtctatgccaatggct 54397205  T
Q  322 ttgccttc 329  Q
    ||||||||    
T  54397206 ttgccttc 54397213  T

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Target: chr7 (Bit Score: 64; Significance: 6e-28; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 148 - 287
Target Start/End: Original strand, 39986953 - 39987092
Alignment:
Q  148 gggttcatggcaacttgattcttagcagcatcgccgatgagtcgttcggtatcggtgaatgccacgtaggatggtgttgtgcggttgccttggtcgttag 247  Q
    |||||||||||||||||||||||||||||||| |||||||| || ||||  |||||||| || ||||| || || || || ||||| ||||||||||| |    
T  39986953 gggttcatggcaacttgattcttagcagcatcaccgatgagacgctcggagtcggtgaaagcgacgtaagacggcgtggtacggttaccttggtcgttgg 39987052  T
Q  248 ggatgatttcgacgcggtcgttttgccatacaccgacgca 287  Q
     ||||||||| || ||||| | ||||||||||||||||||    
T  39987053 cgatgatttcaacacggtcatgttgccatacaccgacgca 39987092  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 133 - 185
Target Start/End: Original strand, 17261366 - 17261418
Alignment:
Q  133 aagacggtgttctgtgggttcatggcaacttgattcttagcagcatcgccgat 185  Q
    ||||||||||| | |||||| |||||| ||||||||||||| ||||| |||||    
T  17261366 aagacggtgttttctgggtttatggcagcttgattcttagcggcatcaccgat 17261418  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 133 - 173
Target Start/End: Original strand, 17269074 - 17269114
Alignment:
Q  133 aagacggtgttctgtgggttcatggcaacttgattcttagc 173  Q
    ||||||||||| | ||||||||||||| |||||||||||||    
T  17269074 aagacggtgttttctgggttcatggcagcttgattcttagc 17269114  T

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Target: chr2 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 102 - 287
Target Start/End: Complemental strand, 17647640 - 17647455
Alignment:
Q  102 gaatctacgaccaattaaacgcttagcatcgaagacggtgttctgtgggttcatggcaacttgattcttagcagcatcgccgatgagtcgttcggtatcg 201  Q
    ||||||||||||||| || | |||||||||||||| ||||||    |||||| |||| |||||||||||||| ||||| |||||||| |  || |  |||    
T  17647640 gaatctacgaccaatcaacctcttagcatcgaagatggtgttgatagggttcctggcgacttgattcttagcggcatcaccgatgagactctcagagtcg 17647541  T
Q  202 gtgaatgccacgtaggatggtgttgtgcggttgccttggtcgttagggatgatttcgacgcggtcgttttgccatacaccgacgca 287  Q
    || || || ||||| || ||||| || | | | | ||||||||| | ||||||||| ||  |||| | ||||||||||||||||||    
T  17647540 gtaaaggcaacgtatgacggtgtggttctgctacattggtcgttggcgatgatttcaacatggtcatgttgccatacaccgacgca 17647455  T

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Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 102 - 287
Target Start/End: Complemental strand, 17666294 - 17666109
Alignment:
Q  102 gaatctacgaccaattaaacgcttagcatcgaagacggtgttctgtgggttcatggcaacttgattcttagcagcatcgccgatgagtcgttcggtatcg 201  Q
    ||||||||| ||||| || | |||||||||||||| ||||||    |||||| |||  |||||||||||||| ||||| || ||||| || || |  |||    
T  17666294 gaatctacggccaatcaacctcttagcatcgaagatggtgttgatagggttcctggtgacttgattcttagcggcatcaccaatgagacgctctgagtcg 17666195  T
Q  202 gtgaatgccacgtaggatggtgttgtgcggttgccttggtcgttagggatgatttcgacgcggtcgttttgccatacaccgacgca 287  Q
    || || || ||||| || ||||| || | ||| ||||||||||| | ||||||||| || ||||| | || |||||||||||||||    
T  17666194 gtaaaggcgacgtaagacggtgtggttctgttaccttggtcgttggcgatgatttcaacacggtcatgtttccatacaccgacgca 17666109  T

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Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 102 - 287
Target Start/End: Complemental strand, 17716298 - 17716113
Alignment:
Q  102 gaatctacgaccaattaaacgcttagcatcgaagacggtgttctgtgggttcatggcaacttgattcttagcagcatcgccgatgagtcgttcggtatcg 201  Q
    ||||||||| ||||| || | |||||||||||||||||||||    ||||||  ||  |||||||||  ||| ||||| ||||||||  | ||||  |||    
T  17716298 gaatctacggccaatcaacctcttagcatcgaagacggtgttgatagggttcgaggagacttgattcagagcggcatcaccgatgagatgctcggagtcg 17716199  T
Q  202 gtgaatgccacgtaggatggtgttgtgcggttgccttggtcgttagggatgatttcgacgcggtcgttttgccatacaccgacgca 287  Q
    || || || ||||| |||||||| || | ||| ||||||||||| | ||||||||| || ||||| | |||||||||||| |||||    
T  17716198 gtaaaggcaacgtaagatggtgtagttctgttaccttggtcgttggcgatgatttcaacacggtcatgttgccatacacctacgca 17716113  T

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Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 102 - 287
Target Start/End: Complemental strand, 17621556 - 17621371
Alignment:
Q  102 gaatctacgaccaattaaacgcttagcatcgaagacggtgttctgtgggttcatggcaacttgattcttagcagcatcgccgatgagtcgttcggtatcg 201  Q
    ||||||||| ||||| || | ||||||||| |||||||||||    ||||||  |||||||||||||||||||| ||| || ||||| |  || |  |||    
T  17621556 gaatctacggccaatcaacctcttagcatcaaagacggtgttgatagggttcgaggcaacttgattcttagcagtatcaccaatgagacagtcagagtcg 17621457  T
Q  202 gtgaatgccacgtaggatggtgttgtgcggttgccttggtcgttagggatgatttcgacgcggtcgttttgccatacaccgacgca 287  Q
    || || || ||||| |||||||| || | ||| ||||||| ||| | ||||||||| || ||||| | ||| |||||||| |||||    
T  17621456 gtaaaggcaacgtaagatggtgtggttctgttaccttggttgttggcgatgatttcaacacggtcatgttgacatacacctacgca 17621371  T

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Target: chr2; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 102 - 287
Target Start/End: Complemental strand, 17703654 - 17703469
Alignment:
Q  102 gaatctacgaccaattaaacgcttagcatcgaagacggtgttctgtgggttcatggcaacttgattcttagcagcatcgccgatgagtcgttcggtatcg 201  Q
    ||||||||||||||| || | |||||||||||||||||||||    ||||||  ||  |||||||||||||| ||||| |||||||| |  ||||  ||     
T  17703654 gaatctacgaccaatcaacctcttagcatcgaagacggtgttgatagggttcgaggagacttgattcttagcggcatcaccgatgagacactcggagtca 17703555  T
Q  202 gtgaatgccacgtaggatggtgttgtgcggttgccttggtcgttagggatgatttcgacgcggtcgttttgccatacaccgacgca 287  Q
    || || || ||||| || | ||| || | ||||||||||||||| | |||||| |  || ||||| | |||||||||||| |||||    
T  17703554 gtaaaggcgacgtaagacgatgtggttctgttgccttggtcgttggcgatgatgtgaacacggtcatgttgccatacacctacgca 17703469  T

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Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 102 - 287
Target Start/End: Complemental strand, 17717559 - 17717374
Alignment:
Q  102 gaatctacgaccaattaaacgcttagcatcgaagacggtgttctgtgggttcatggcaacttgattcttagcagcatcgccgatgagtcgttcggtatcg 201  Q
    ||||||||| ||||| || | |||||||||||||||||||||    ||||||  ||| ||||||||| |||| ||||| ||||||||  | ||||  |||    
T  17717559 gaatctacggccaatcaacctcttagcatcgaagacggtgttgatagggttcgaggcgacttgattcatagcggcatcaccgatgagatgctcggagtcg 17717460  T
Q  202 gtgaatgccacgtaggatggtgttgtgcggttgccttggtcgttagggatgatttcgacgcggtcgttttgccatacaccgacgca 287  Q
    || || || ||||| || || || || | ||| |||||||| || | ||||||||| ||  |||| | |||||||||||| |||||    
T  17717459 gtaaaggcgacgtaagacggagtggttctgttaccttggtcattggtgatgatttcaacatggtcatgttgccatacacctacgca 17717374  T

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Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 133 - 185
Target Start/End: Complemental strand, 16656728 - 16656676
Alignment:
Q  133 aagacggtgttctgtgggttcatggcaacttgattcttagcagcatcgccgat 185  Q
    |||| |||||| ||||||||   |||||||||||||||||||||||| |||||    
T  16656728 aagatggtgttttgtgggttagcggcaacttgattcttagcagcatcaccgat 16656676  T

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