View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11557A_low_9 (Length: 535)
Name: NF11557A_low_9
Description: NF11557A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11557A_low_9 |
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Alignment Details
Target: chr2 (Bit Score: 210; Significance: 1e-115; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 151 - 380
Target Start/End: Original strand, 32213474 - 32213703
Alignment:
| Q |
151 |
attataaacaagaacaatcgagtttctatgttcacaacaatttaacaaaataaagcaagaccaatctcttggcttaatgtccagtttatctaatacagca |
250 |
Q |
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| T |
32213474 |
attattaacaagaacaatcgagtttctatgttcacgacaatttaacaaaataaagcaagaccaatctcttggcttaatgtccagtttatctaatacagca |
32213573 |
T |
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| Q |
251 |
ccctaacatattaggtttagttcattatacttaagcttacttggcagttcttgattggttgatgtgtgcatcgcgcaagctggtactcgtgtctaccaaa |
350 |
Q |
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| T |
32213574 |
ccctaacatattaggtttagttcattatacttaagctgacttggcagttcttgattggttgatgtgtgcatcgcgcatgctggtacgcgtgtctaccaaa |
32213673 |
T |
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| Q |
351 |
agtagaaacctttttgatggtgcaatatgt |
380 |
Q |
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| T |
32213674 |
agtagaaacctttttgatggtgcaatatgt |
32213703 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 137; E-Value: 3e-71
Query Start/End: Original strand, 373 - 525
Target Start/End: Original strand, 32216311 - 32216463
Alignment:
| Q |
373 |
caatatgtgcgtcacatagagtataatgcacctcgtgcgtgagttttcgtaataagatcttgcatttcatttctttggttcttcaaggagaataaaccat |
472 |
Q |
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| T |
32216311 |
caatatgtgcgtcacatagagtataatgcacctcgtgcgtgagttttcgtaaaaagatcttgcatttcatttctttggttcttcaaggagaataaacctt |
32216410 |
T |
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| Q |
473 |
tgaattgcctttggaatttgagatagaattacctcaagtaatatggacttcat |
525 |
Q |
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| T |
32216411 |
tgaattgcctttggaatttgagatagaattacctcaagtagtctggacttcat |
32216463 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 115; E-Value: 4e-58
Query Start/End: Original strand, 12 - 134
Target Start/End: Original strand, 32212819 - 32212941
Alignment:
| Q |
12 |
aatataagtcaagttataaaccgtttttatgagctattgatggtattttaccaagtgtaccaaaacgtcgtccaagtaatgaagagaataagttggtttc |
111 |
Q |
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| T |
32212819 |
aatataagtcaagttataaaccgtttttatgagctattgatggtcttttaccaagtgtaccaaaacgtcgtccaagtaatgaaaagaataagttggtttc |
32212918 |
T |
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| Q |
112 |
tacagggtcgtttaatttctaca |
134 |
Q |
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| T |
32212919 |
tacagggtcgtttaatttctaca |
32212941 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 395 - 525
Target Start/End: Original strand, 32225604 - 32225734
Alignment:
| Q |
395 |
ataatgcacctcgtgcgtgagttttcgtaataagatcttgcatttcatttctttggttcttcaaggagaataaaccattgaattgcctttggaatttgag |
494 |
Q |
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| T |
32225604 |
ataatgcacctcgtgcgttagttttcgtaaaaagatcttgcatttcatttatttggttcttcaaggagaataaacttttgacttgcctttggaatttgag |
32225703 |
T |
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| Q |
495 |
atagaattacctcaagtaatatggacttcat |
525 |
Q |
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| T |
32225704 |
atagaattacctcaagtagtctggacttcat |
32225734 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000008; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 170 - 227
Target Start/End: Original strand, 25228235 - 25228291
Alignment:
| Q |
170 |
gagtttctatgttcacaacaatttaacaaaataaagcaagaccaatctcttggcttaa |
227 |
Q |
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| T |
25228235 |
gagtttctatgt-cacgacaatttaacaaaatagatcaagaccaatgtcttggcttaa |
25228291 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 194 - 256
Target Start/End: Original strand, 19995942 - 19996004
Alignment:
| Q |
194 |
aacaaaataaagcaagaccaatctcttggcttaatgtccagtttatctaatacagcaccctaa |
256 |
Q |
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| T |
19995942 |
aacaaaataaatcaagaccaatttcttggttgaatgtcctatttatctaatatagaaccctaa |
19996004 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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