View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11557A_low_92 (Length: 342)
Name: NF11557A_low_92
Description: NF11557A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11557A_low_92 |
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Alignment Details
Target: chr2 (Bit Score: 282; Significance: 1e-158; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 20 - 329
Target Start/End: Original strand, 1516152 - 1516461
Alignment:
| Q |
20 |
atattcttctttaagctttggatttgacaaagtctcataagctgcattgagttgtacaaacatcttcgttgattcctctttcttcaaacgatcatgacaa |
119 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1516152 |
atattcttctttaagctttggatttgacaaagtctcataagctgcattgagttgtacaaacatcttcgttgattcctctttcttcaaacgatcatgacaa |
1516251 |
T |
|
| Q |
120 |
acatcaggatgatactggagagccattgttctatatgctctctttatgtcatccattgttgcacttttaggactcaaacatagtatcttgtacaagttgc |
219 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1516252 |
acatcaggatgatactggagagccattgttctatatgctctctttatgtcatccattgttgcacttttaggactcaaacatagtatcttgtacaagttgc |
1516351 |
T |
|
| Q |
220 |
catcatcattcagctcaggttgaattggaacatttttgttagctctgcatgaaacaaaaaactgcatacgaggttgtctacttgagagtggaaggatatg |
319 |
Q |
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|||||||||||| |||| ||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1516352 |
catcatcattcaactcattatgaattggaacattttttgtagctctgcatgaaacagaaaactgcatacgaggttgtctacttgagagtggaaggatatg |
1516451 |
T |
|
| Q |
320 |
atgttgatat |
329 |
Q |
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|||||||||| |
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| T |
1516452 |
atgttgatat |
1516461 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 20 - 329
Target Start/End: Original strand, 1530382 - 1530691
Alignment:
| Q |
20 |
atattcttctttaagctttggatttgacaaagtctcataagctgcattgagttgtacaaacatcttcgttgattcctctttcttcaaacgatcatgacaa |
119 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1530382 |
atattcttctttaagctttggatttgacaaagtctcataagctgcattgagttgtacaaacatcttcgttgattcctctttcttcaaacgatcatgacaa |
1530481 |
T |
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| Q |
120 |
acatcaggatgatactggagagccattgttctatatgctctctttatgtcatccattgttgcacttttaggactcaaacatagtatcttgtacaagttgc |
219 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1530482 |
acatcaggatgatactggagagccattgttctatatgctctctttatgtcatccattgttgcacttttaggactcaaacatagtatcttgtacaagttgc |
1530581 |
T |
|
| Q |
220 |
catcatcattcagctcaggttgaattggaacatttttgttagctctgcatgaaacaaaaaactgcatacgaggttgtctacttgagagtggaaggatatg |
319 |
Q |
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|||||||||||| |||| ||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1530582 |
catcatcattcaactcattatgaattggaacattttttgtagctctgcatgaaacagaaaactgcatacgaggttgtctacttgagagtggaaggatatg |
1530681 |
T |
|
| Q |
320 |
atgttgatat |
329 |
Q |
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|||||||||| |
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| T |
1530682 |
atgttgatat |
1530691 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 65; Significance: 2e-28; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 39 - 187
Target Start/End: Complemental strand, 37593131 - 37592983
Alignment:
| Q |
39 |
ggatttgacaaagtctcataagctgcattgagttgtacaaacatcttcgttgattcctctttcttcaaacgatcatgacaaacatcaggatgatactgga |
138 |
Q |
| |
|
||||| |||||||| |||||||||||||| | | ||||| || || ||||||||||||||| | || |||||||||| ||||||||||||||||| | |
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| T |
37593131 |
ggattcgacaaagtttcataagctgcatttaaccgaacaaatattttagttgattcctctttcatggaaggatcatgacacacatcaggatgatactgaa |
37593032 |
T |
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| Q |
139 |
gagccattgttctatatgctctctttatgtcatccattgttgcactttt |
187 |
Q |
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| ||||||| |||||| ||||||||||| || ||||||||||||||||| |
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| T |
37593031 |
gtgccattgatctataagctctctttatatcttccattgttgcactttt |
37592983 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 109 - 197
Target Start/End: Complemental strand, 7978454 - 7978366
Alignment:
| Q |
109 |
gatcatgacaaacatcaggatgatactggagagccattgttctatatgctctctttatgtcatccattgttgcacttttaggactcaaa |
197 |
Q |
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||||| |||| | |||||||||||||| |||||||||||||||||| ||||||||||||||| |||||||| |||| ||||||||||| |
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| T |
7978454 |
gatcacgacacaaatcaggatgatactaaagagccattgttctatattctctctttatgtcattcattgttgaacttctaggactcaaa |
7978366 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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