View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11557A_low_94 (Length: 342)
Name: NF11557A_low_94
Description: NF11557A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11557A_low_94 |
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Alignment Details
Target: chr5 (Bit Score: 286; Significance: 1e-160; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 17 - 318
Target Start/End: Original strand, 35489618 - 35489919
Alignment:
| Q |
17 |
gacatcatgagcacaaagccagcaaagaagaagaaaagtccaaacttcaagtgacaaagcatggtaagaaaaacttgagcaatgataaaggtgaacaaca |
116 |
Q |
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| T |
35489618 |
gacatgatgagcacaaagccagcaaagaagaagaaaagtccaaacttcaagtgacaaagcatggtaagaaaaacttgagcaatgataaaggtgaacaaca |
35489717 |
T |
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| Q |
117 |
tgttcactgcaacattggtagcttgacctgcagatcggacttcaagagagcatatttcactaggaactaaccatcccaacgcaccccaagaccatgcaaa |
216 |
Q |
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| T |
35489718 |
tgttcactgcaacattggtagcttgacctgcagatcggacttcaagagagcatatttcactgggaactaaccatcccagcgcaccccaagaccatgcaaa |
35489817 |
T |
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| Q |
217 |
tgccgcaacatatagacatataaagactaagagaagatcagcttcggtttttgtaaacgagccttcaccgctaactccaagtttgatagcaatcatactt |
316 |
Q |
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| T |
35489818 |
tgccgcaacatatagacatataaagactaagagaagatcagcttcagtttttgtaaacgagccttcaccgctaactccaagtttgatagcaatcatactt |
35489917 |
T |
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| Q |
317 |
cc |
318 |
Q |
| |
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|| |
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| T |
35489918 |
cc |
35489919 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 55 - 217
Target Start/End: Original strand, 18233837 - 18233999
Alignment:
| Q |
55 |
tccaaacttcaagtgacaaagcatggtaagaaaaacttgagcaatgataaaggtgaacaacatgttcactgcaacattggtagcttgacctgcagatcgg |
154 |
Q |
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| T |
18233837 |
tccaaacttcatgtgacaaagcattgtagtgaaaatttgagcaatgataaaggtgcaaatcatgttaacagagacattgatactttgagccgcagaacga |
18233936 |
T |
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| Q |
155 |
acttcaagagagcatatttcactaggaactaaccatcccaacgcaccccaagaccatgcaaat |
217 |
Q |
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| T |
18233937 |
acttcgagtgggaatatttcacttggcaccaaccaacctagaggaccccaagaccatgcaaat |
18233999 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 115; Significance: 2e-58; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 28 - 262
Target Start/End: Complemental strand, 14233314 - 14233080
Alignment:
| Q |
28 |
cacaaagccagcaaagaagaagaaaagtccaaacttcaagtgacaaagcatggtaagaaaaacttgagcaatgataaaggtgaacaacatgttcactgca |
127 |
Q |
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|||||| ||||||||||| |||||||| |||||||||||||||||||||||||| || || ||||||||||| ||||| ||||| ||||||||||| ||| |
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| T |
14233314 |
cacaaaaccagcaaagaaaaagaaaaggccaaacttcaagtgacaaagcatggttaggaagacttgagcaatcataaatgtgaagaacatgttcaccgca |
14233215 |
T |
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| Q |
128 |
acattggtagcttgacctgcagatcggacttcaagagagcatatttcactaggaactaaccatcccaacgcaccccaagaccatgcaaatgccgcaacat |
227 |
Q |
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| T |
14233214 |
acatttatagcttgacctgctggtcgaacctctagagcgcatatttcactaggcactaaccaacccaatggtccccaagaccatgcaaatgccgcaacat |
14233115 |
T |
|
| Q |
228 |
atagacatataaagactaagagaagatcagcttcg |
262 |
Q |
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|| ||| ||||||| |||||||| || |||||| |
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| T |
14233114 |
atgcacaaataaagaacaagagaaggtcggcttcg |
14233080 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 28 - 262
Target Start/End: Complemental strand, 14242988 - 14242754
Alignment:
| Q |
28 |
cacaaagccagcaaagaagaagaaaagtccaaacttcaagtgacaaagcatggtaagaaaaacttgagcaatgataaaggtgaacaacatgttcactgca |
127 |
Q |
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|||||| ||||||||||| |||||||| |||||||||||||||||||||||||| || || ||||||||||| ||||| ||||| ||||||||||| ||| |
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| T |
14242988 |
cacaaaaccagcaaagaaaaagaaaaggccaaacttcaagtgacaaagcatggttaggaagacttgagcaatcataaatgtgaagaacatgttcaccgca |
14242889 |
T |
|
| Q |
128 |
acattggtagcttgacctgcagatcggacttcaagagagcatatttcactaggaactaaccatcccaacgcaccccaagaccatgcaaatgccgcaacat |
227 |
Q |
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| T |
14242888 |
acatttatagcttgacctgctggtcgaacctctagagcgcatacttcactaggcactaaccaacccaatggtccccaagaccatgcaaatgccgcaacat |
14242789 |
T |
|
| Q |
228 |
atagacatataaagactaagagaagatcagcttcg |
262 |
Q |
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|| ||| ||||||| |||||||| || |||||| |
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| T |
14242788 |
atgcacaaataaagaacaagagaaggtcggcttcg |
14242754 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 61 - 261
Target Start/End: Complemental strand, 51580714 - 51580515
Alignment:
| Q |
61 |
cttcaagtgacaaagcatggtaagaaaaacttgagcaatgataaaggtgaacaacatgttcactgcaacattggtagcttgacctgcagatcggacttca |
160 |
Q |
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||||||||||||||||||| | || ||||||||||||| | ||| ||||| ||||||||||| ||||||||| |||||||||||||||||| || ||| |
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| T |
51580714 |
cttcaagtgacaaagcatgttgaggaaaacttgagcaacaacaaatgtgaataacatgttcacggcaacattgatagcttgacctgcagatcaaacctca |
51580615 |
T |
|
| Q |
161 |
agagagcatatttcactaggaactaaccatcccaacgcaccccaagaccatgcaaatgccgcaacatatagacatataaagactaagagaagatcagctt |
260 |
Q |
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| T |
51580614 |
agagaacaaatttcacttgg-tccgaccaacctagcgggccccaagacccagcaaatgccgcaacatatgcacttataaagaataaaagaagctcggctt |
51580516 |
T |
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